Monthly Letter

1. Identification of cancer-related mutations in human pluripotent stem cells using RNA-seq analysis.
Lezmi E, Benvenisty N. Nat Protoc. 2021 Aug 6. doi: 10.1038/s41596-021-00591-5. Online ahead of print.

2. m(6)Am-seq reveals the dynamic m(6)Am methylation in the human transcriptome.
Sun H, Li K, Zhang X, Liu J, Zhang M, Meng H, Yi C. Nat Commun. 2021 Aug 6;12(1):4778. doi: 10.1038/s41467-021-25105-5.

3. How should we define mammary stem cells?.
Watson CJ. Trends Cell Biol. 2021 Aug;31(8):621-627. doi: 10.1016/j.tcb.2021.03.012. Epub 2021 Apr 23.

4. Bayesian inference of gene expression states from single-cell RNA-seq data.
Breda J, Zavolan M, van Nimwegen E. Nat Biotechnol. 2021 Aug;39(8):1008-1016. doi: 10.1038/s41587-021-00875-x. Epub 2021 Apr 29.

5. Chronological genome and single-cell transcriptome integration characterizes the evolutionary process of adult T cell leukemia-lymphoma.
Yamagishi M, Kubokawa M, Kuze Y, Suzuki A, Yokomizo A, Kobayashi S, Nakashima M, Makiyama J, Iwanaga M, Fukuda T, Watanabe T, Suzuki Y, Uchimaru K. Nat Commun. 2021 Aug 10;12(1):4821. doi: 10.1038/s41467-021-25101-9.

6. Single-cell RNA-sequencing reveals pre-meiotic X-chromosome dosage compensation in Drosophila testis.
Witt E, Shao Z, Hu C, Krause HM, Zhao L. PLoS Genet. 2021 Aug 17;17(8):e1009728. doi: 10.1371/journal.pgen.1009728. eCollection 2021 Aug.

7. Prioritization of cell types responsive to biological perturbations in single-cell data with Augur.
Squair JW, Skinnider MA, Gautier M, Foster LJ, Courtine G. Nat Protoc. 2021 Aug;16(8):3836-3873. doi: 10.1038/s41596-021-00561-x. Epub 2021 Jun 25.

8. Molecular topography of an entire nervous system.
Taylor SR, Santpere G, Weinreb A, Barrett A, Reilly MB, Xu C, Varol E, Oikonomou P, Glenwinkel L, McWhirter R, Poff A, Basavaraju M, Rafi I, Yemini E, Cook SJ, Abrams A, Vidal B, Cros C, Tavazoie S, Sestan N, Hammarlund M, Hobert O, Miller DM 3rd. Cell. 2021 Aug 5;184(16):4329-4347.e23. doi: 10.1016/j.cell.2021.06.023. Epub 2021 Jul 7.

9. CoCoA-diff: counterfactual inference for single-cell gene expression analysis.
Park YP, Kellis M. Genome Biol. 2021 Aug 17;22(1):228. doi: 10.1186/s13059-021-02438-4.

10. m6A-express: uncovering complex and condition-specific m6A regulation of gene expression.
Zhang T, Zhang SW, Zhang SY, Gao SJ, Chen Y, Huang Y. Nucleic Acids Res. 2021 Aug 20:gkab714. doi: 10.1093/nar/gkab714. Online ahead of print.

11. Quantitative mapping of the cellular small RNA landscape with AQRNA-seq.
Hu JF, Yim D, Ma D, Huber SM, Davis N, Bacusmo JM, Vermeulen S, Zhou J, Begley TJ, DeMott MS, Levine SS, de Crécy-Lagard V, Dedon PC, Cao B. Nat Biotechnol. 2021 Aug;39(8):978-988. doi: 10.1038/s41587-021-00874-y. Epub 2021 Apr 15.

12. Clinical Implications of Inter- and Intra-Tumor Heterogeneity of Immune Cell Markers in Lung Cancer.
Zhao W, Zhu B, Hutchinson A, Pesatori AC, Consonni D, Caporaso NE, Zhang T, Wang D, Shi J, Landi MT. J Natl Cancer Inst. 2021 Aug 17:djab157. doi: 10.1093/jnci/djab157. Online ahead of print.

13. NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport.
Moriel N, Senel E, Friedman N, Rajewsky N, Karaiskos N, Nitzan M. Nat Protoc. 2021 Aug 4. doi: 10.1038/s41596-021-00573-7. Online ahead of print.

14. Small RNA expression and miRNA modification dynamics in human oocytes and early embryos.
Paloviita P, Hydén-Granskog C, Yohannes DA, Paluoja P, Kere J, Tapanainen JS, Krjutškov K, Tuuri T, Võsa U, Vuoristo S. Genome Res. 2021 Aug;31(8):1474-1485. doi: 10.1101/gr.268193.120.

15. Simultaneous ribosome profiling of hundreds of microbes from the human microbiome.
Fremin BJ, Nicolaou C, Bhatt AS. Nat Protoc. 2021 Aug 11. doi: 10.1038/s41596-021-00592-4. Online ahead of print.

16. Long-read RNA sequencing reveals widespread sex-specific alternative splicing in threespine stickleback fish.
Naftaly AS, Pau S, White MA. Genome Res. 2021 Aug;31(8):1486-1497. doi: 10.1101/gr.274282.120. Epub 2021 Jun 15.

17. Sfaira accelerates data and model reuse in single cell genomics.
Fischer DS, Dony L, König M, Moeed A, Zappia L, Heumos L, Tritschler S, Holmberg O, Aliee H, Theis FJ. Genome Biol. 2021 Aug 25;22(1):248. doi: 10.1186/s13059-021-02452-6.

18. Spatial tissue profiling by imaging-free molecular tomography.
Schede HH, Schneider CG, Stergiadou J, Borm LE, Ranjak A, Yamawaki TM, David FPA, Lönnerberg P, Tosches MA, Codeluppi S, La Manno G. Nat Biotechnol. 2021 Aug;39(8):968-977. doi: 10.1038/s41587-021-00879-7. Epub 2021 Apr 19.

19. AHR signaling is induced by infection with coronaviruses.
Giovannoni F, Li Z, Remes-Lenicov F, Dávola ME, Elizalde M, Paletta A, Ashkar AA, Mossman KL, Dugour AV, Figueroa JM, Barquero AA, Ceballos A, Garcia CC, Quintana FJ. Nat Commun. 2021 Aug 26;12(1):5148. doi: 10.1038/s41467-021-25412-x.

20. TERA-Seq: true end-to-end sequencing of native RNA molecules for transcriptome characterization.
Ibrahim F, Oppelt J, Maragkakis M, Mourelatos Z. Nucleic Acids Res. 2021 Aug 24:gkab713. doi: 10.1093/nar/gkab713. Online ahead of print.

21. Chromatin lncRNA Platr10 controls stem cell pluripotency by coordinating an intrachromosomal regulatory network.
Du Z, Wen X, Wang Y, Jia L, Zhang S, Liu Y, Zhou L, Li H, Yang W, Wang C, Chen J, Hao Y, Chen H, Li D, Chen N, Celik I, Zhu Y, Yan Z, Fu C, Liu S, Jiao B, Wang Z, Zhang H, Gülsoy G, Luo J, Qin B, Gao S, Kapranov P, Esteban MA, Zhang S, Li W, Ay F, Chen R, Hoffman AR, Cui J, Hu JF. Genome Biol. 2021 Aug 19;22(1):233. doi: 10.1186/s13059-021-02444-6.

22. EVAtlas: a comprehensive database for ncRNA expression in human extracellular vesicles.
Liu CJ, Xie GY, Miao YR, Xia M, Wang Y, Lei Q, Zhang Q, Guo AY. Nucleic Acids Res. 2021 Aug 13:gkab668. doi: 10.1093/nar/gkab668. Online ahead of print.

23. An unsupervised method for physical cell interaction profiling of complex tissues.
Andrews N, Serviss JT, Geyer N, Andersson AB, Dzwonkowska E, Šutevski I, Heijboer R, Baryawno N, Gerling M, Enge M. Nat Methods. 2021 Aug;18(8):912-920. doi: 10.1038/s41592-021-01196-2. Epub 2021 Jul 12.

24. BRIE2: computational identification of splicing phenotypes from single-cell transcriptomic experiments.
Huang Y, Sanguinetti G. Genome Biol. 2021 Aug 27;22(1):251. doi: 10.1186/s13059-021-02461-5.

25. SCAPTURE: a deep learning-embedded pipeline that captures polyadenylation information from 3' tag-based RNA-seq of single cells.
Li GW, Nan F, Yuan GH, Liu CX, Liu X, Chen LL, Tian B, Yang L. Genome Biol. 2021 Aug 10;22(1):221. doi: 10.1186/s13059-021-02437-5.

26. The developing mouse coronal suture at single-cell resolution.
Farmer DT, Mlcochova H, Zhou Y, Koelling N, Wang G, Ashley N, Bugacov H, Chen HJ, Parvez R, Tseng KC, Merrill AE, Maxson RE Jr, Wilkie AOM, Crump JG, Twigg SRF. Nat Commun. 2021 Aug 10;12(1):4797. doi: 10.1038/s41467-021-24917-9.

27. Distinct regulation of hippocampal neuroplasticity and ciliary genes by corticosteroid receptors.
Mifsud KR, Kennedy CLM, Salatino S, Sharma E, Price EM, Haque SN, Gialeli A, Goss HM, Panchenko PE, Broxholme J, Engledow S, Lockstone H, Cordero Llana O, Reul JMHM. Nat Commun. 2021 Aug 6;12(1):4737. doi: 10.1038/s41467-021-24967-z.

28. Oncostatin M Receptor-targeted antibodies suppress STAT3 signaling and inhibit ovarian cancer growth.
Geethadevi A, Nair A, Parashar D, Ku Z, Xiong W, Deng H, Li Y, George J, McAllister DM, Sun Y, Kadamberi IP, Gupta P, Dwinell MB, Bradley WH, Rader JS, Rui H, Schwabe RF, Zhang N, Pradeep S, An Z, Chaluvally-Raghavan P. Cancer Res. 2021 Aug 11:canres.0483.2021. doi: 10.1158/0008-5472.CAN-21-0483. Online ahead of print.

29. Systematic dissection of σ(70) sequence diversity and function in bacteria.
Park J, Wang HH. Cell Rep. 2021 Aug 24;36(8):109590. doi: 10.1016/j.celrep.2021.109590.

30. Acute depletion of CTCF rewires genome-wide chromatin accessibility.
Xu B, Wang H, Wright S, Hyle J, Zhang Y, Shao Y, Niu M, Fan Y, Rosikiewicz W, Djekidel MN, Peng J, Lu R, Li C. Genome Biol. 2021 Aug 24;22(1):244. doi: 10.1186/s13059-021-02466-0.

31. Feedback repression of PPARα signaling by Let-7 microRNA.
Yagai T, Yan T, Luo Y, Takahashi S, Aibara D, Kim D, Brocker CN, Levi M, Motohashi H, Gonzalez FJ. Cell Rep. 2021 Aug 10;36(6):109506. doi: 10.1016/j.celrep.2021.109506.

32. Inferring genes that escape X-Chromosome inactivation reveals important contribution of variable escape genes to sex-biased diseases.
Sauteraud R, Stahl JM, James J, Englebright M, Chen F, Zhan X, Carrel L, Liu DJ. Genome Res. 2021 Aug 23. doi: 10.1101/gr.275677.121. Online ahead of print.

33. ZEB1 promotes pathogenic Th1 and Th17 cell differentiation in multiple sclerosis.
Qian Y, Arellano G, Ifergan I, Lin J, Snowden C, Kim T, Thomas JJ, Law C, Guan T, Balabanov RD, Kaech SM, Miller SD, Choi J. Cell Rep. 2021 Aug 24;36(8):109602. doi: 10.1016/j.celrep.2021.109602.

34. Transposable elements and their KZFP controllers are drivers of transcriptional innovation in the developing human brain.
Playfoot CJ, Duc J, Sheppard S, Dind S, Coudray A, Planet E, Trono D. Genome Res. 2021 Aug 16. doi: 10.1101/gr.275133.120. Online ahead of print.

35. Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers.
Caushi JX, Zhang J, Ji Z, Vaghasia A, Zhang B, Hsiue EH, Mog BJ, Hou W, Justesen S, Blosser R, Tam A, Anagnostou V, Cottrell TR, Guo H, Chan HY, Singh D, Thapa S, Dykema AG, Burman P, Choudhury B, Aparicio L, Cheung LS, Lanis M, Belcaid Z, El Asmar M, Illei PB, Wang R, Meyers J, Schuebel K, Gupta A, Skaist A, Wheelan S, Naidoo J, Marrone KA, Brock M, Ha J, Bush EL, Park BJ, Bott M, Jones DR, Reuss JE, Velculescu VE, Chaft JE, Kinzler KW, Zhou S, Vogelstein B, Taube JM, Hellmann MD, Brahmer JR, Merghoub T, Forde PM, Yegnasubramanian S, Ji H, Pardoll DM, Smith KN. Nature. 2021 Aug;596(7870):126-132. doi: 10.1038/s41586-021-03752-4. Epub 2021 Jul 21.

36. An in vitro platform supports generation of human innate lymphoid cells from CD34(+) hematopoietic progenitors that recapitulate ex vivo identity.
Hernández DC, Juelke K, Müller NC, Durek P, Ugursu B, Mashreghi MF, Rückert T, Romagnani C. Immunity. 2021 Aug 24:S1074-7613(21)00307-1. doi: 10.1016/j.immuni.2021.07.019. Online ahead of print.

37. Corticosterone pattern-dependent glucocorticoid receptor binding and transcriptional regulation within the liver.
Flynn BP, Birnie MT, Kershaw YM, Pauza AG, Kim S, Baek S, Rogers MF, Paterson AR, Stavreva DA, Murphy D, Hager GL, Lightman SL, Conway-Campbell BL. PLoS Genet. 2021 Aug 10;17(8):e1009737. doi: 10.1371/journal.pgen.1009737. eCollection 2021 Aug.

38. Single-cell RNA analysis identifies pre-migratory neural crest cells expressing markers of differentiated derivatives.
Lencer E, Prekeris R, Artinger KB. Elife. 2021 Aug 16;10:e66078. doi: 10.7554/eLife.66078.

39. A transcription-based mechanism for oncogenic β-catenin-induced lethality in BRCA1/2-deficient cells.
Dagg RA, Zonderland G, Lombardi EP, Rossetti GG, Groelly FJ, Barroso S, Tacconi EMC, Wright B, Lockstone H, Aguilera A, Halazonetis TD, Tarsounas M. Nat Commun. 2021 Aug 13;12(1):4919. doi: 10.1038/s41467-021-25215-0.

40. The Rsm (Csr) post-transcriptional regulatory pathway coordinately controls multiple CRISPR-Cas immune systems.
Campa AR, Smith LM, Hampton HG, Sharma S, Jackson SA, Bischler T, Sharma CM, Fineran PC. Nucleic Acids Res. 2021 Aug 17:gkab704. doi: 10.1093/nar/gkab704. Online ahead of print.

41. Enhancer RNA m6A methylation facilitates transcriptional condensate formation and gene activation.
Lee JH, Wang R, Xiong F, Krakowiak J, Liao Z, Nguyen PT, Moroz-Omori EV, Shao J, Zhu X, Bolt MJ, Wu H, Singh PK, Bi M, Shi CJ, Jamal N, Li G, Mistry R, Jung SY, Tsai KL, Ferreon JC, Stossi F, Caflisch A, Liu Z, Mancini MA, Li W. Mol Cell. 2021 Aug 19;81(16):3368-3385.e9. doi: 10.1016/j.molcel.2021.07.024. Epub 2021 Aug 9.

42. A human mutation in STAT3 promotes type 1 diabetes through a defect in CD8+ T cell tolerance.
Warshauer JT, Belk JA, Chan AY, Wang J, Gupta AR, Shi Q, Skartsis N, Peng Y, Phipps JD, Acenas D, Smith JA, Tamaki SJ, Tang Q, Gardner JM, Satpathy AT, Anderson MS. J Exp Med. 2021 Aug 2;218(8):e20210759. doi: 10.1084/jem.20210759. Epub 2021 Jun 11.

43. The Δ40p53 isoform inhibits p53-dependent eRNA transcription and enables regulation by signal-specific transcription factors during p53 activation.
Levandowski CB, Jones T, Gruca M, Ramamoorthy S, Dowell RD, Taatjes DJ. PLoS Biol. 2021 Aug 5;19(8):e3001364. doi: 10.1371/journal.pbio.3001364. eCollection 2021 Aug.

44. Spliceosomal component PRP-40 is a central regulator of microexon splicing.
Choudhary B, Marx O, Norris AD. Cell Rep. 2021 Aug 3;36(5):109464. doi: 10.1016/j.celrep.2021.109464.

45. Inhibition of YTHDF2 triggers proteotoxic cell death in MYC-driven breast cancer.
Einstein JM, Perelis M, Chaim IA, Meena JK, Nussbacher JK, Tankka AT, Yee BA, Li H, Madrigal AA, Neill NJ, Shankar A, Tyagi S, Westbrook TF, Yeo GW. Mol Cell. 2021 Aug 5;81(15):3048-3064.e9. doi: 10.1016/j.molcel.2021.06.014. Epub 2021 Jul 2.

46. POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins.
Zhao W, Zhang S, Zhu Y, Xi X, Bao P, Ma Z, Kapral TH, Chen S, Zagrovic B, Yang YT, Lu ZJ. Nucleic Acids Res. 2021 Aug 17:gkab702. doi: 10.1093/nar/gkab702. Online ahead of print.

47. hiPSC Modeling of Lineage-Specific Smooth Muscle Cell Defects Caused by TGFBR1(A230T) Variant, and its Therapeutic Implications for Loeys-Dietz Syndrome.
Zhou D, Feng H, Yang Y, Huang T, Qiu P, Zhang C, Olsen T, Zhang J, Chen YE, Mizrak D, Yang B. Circulation. 2021 Aug 4. doi: 10.1161/CIRCULATIONAHA.121.054744. Online ahead of print.

48. MultiK: an automated tool to determine optimal cluster numbers in single-cell RNA sequencing data.
Liu S, Thennavan A, Garay JP, Marron JS, Perou CM. Genome Biol. 2021 Aug 19;22(1):232. doi: 10.1186/s13059-021-02445-5.

49. Neutrophils promote T-cell activation through the regulated release of CD44-bound Galectin-9 from the cell surface during HIV infection.
Dunsmore G, Rosero EP, Shahbaz S, Santer DM, Jovel J, Lacy P, Houston S, Elahi S. PLoS Biol. 2021 Aug 19;19(8):e3001387. doi: 10.1371/journal.pbio.3001387. Online ahead of print.

50. Molecular and functional properties of cortical astrocytes during peripherally induced neuroinflammation.
Diaz-Castro B, Bernstein AM, Coppola G, Sofroniew MV, Khakh BS. Cell Rep. 2021 Aug 10;36(6):109508. doi: 10.1016/j.celrep.2021.109508.

51. Transposable element sequence fragments incorporated into coding and noncoding transcripts modulate the transcriptome of human pluripotent stem cells.
Babarinde IA, Ma G, Li Y, Deng B, Luo Z, Liu H, Abdul MM, Ward C, Chen M, Fu X, Shi L, Duttlinger M, He J, Sun L, Li W, Zhuang Q, Tong G, Frampton J, Cazier JB, Chen J, Jauch R, Esteban MA, Hutchins AP. Nucleic Acids Res. 2021 Aug 14:gkab710. doi: 10.1093/nar/gkab710. Online ahead of print.

52. Sc-compReg enables the comparison of gene regulatory networks between conditions using single-cell data.
Duren Z, Lu WS, Arthur JG, Shah P, Xin J, Meschi F, Li ML, Nemec CM, Yin Y, Wong WH. Nat Commun. 2021 Aug 6;12(1):4763. doi: 10.1038/s41467-021-25089-2.

53. Piwi-piRNA complexes induce stepwise changes in nuclear architecture at target loci.
Iwasaki YW, Sriswasdi S, Kinugasa Y, Adachi J, Horikoshi Y, Shibuya A, Iwasaki W, Tashiro S, Tomonaga T, Siomi H. EMBO J. 2021 Aug 2:e108345. doi: 10.15252/embj.2021108345. Online ahead of print.

54. Viral vector-mediated reprogramming of the fibroblastic tumor stroma sustains curative melanoma treatment.
Ring SS, Cupovic J, Onder L, Lütge M, Perez-Shibayama C, Gil-Cruz C, Scandella E, De Martin A, Mörbe U, Hartmann F, Wenger R, Spiegl M, Besse A, Bonilla WV, Stemeseder F, Schmidt S, Orlinger KK, Krebs P, Ludewig B, Flatz L. Nat Commun. 2021 Aug 5;12(1):4734. doi: 10.1038/s41467-021-25057-w.

55. HDAC1 is required for GATA-1 transcription activity, global chromatin occupancy and hematopoiesis.
Yan B, Yang J, Kim MY, Luo H, Cesari N, Yang T, Strouboulis J, Zhang J, Hardison R, Huang S, Qiu Y. Nucleic Acids Res. 2021 Aug 27:gkab737. doi: 10.1093/nar/gkab737. Online ahead of print.

56. 3'aQTL-atlas: an atlas of 3'UTR alternative polyadenylation quantitative trait loci across human normal tissues.
Cui Y, Peng F, Wang D, Li Y, Li JS, Li L, Li W. Nucleic Acids Res. 2021 Aug 25:gkab740. doi: 10.1093/nar/gkab740. Online ahead of print.

57. INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants.
Dong C, Simonett SP, Shin S, Stapleton DS, Schueler KL, Churchill GA, Lu L, Liu X, Jin F, Li Y, Attie AD, Keller MP, Keleş S. Genome Biol. 2021 Aug 23;22(1):241. doi: 10.1186/s13059-021-02450-8.

58. Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution.
Trevino AE, Müller F, Andersen J, Sundaram L, Kathiria A, Shcherbina A, Farh K, Chang HY, Pașca AM, Kundaje A, Pașca SP, Greenleaf WJ. Cell. 2021 Aug 11:S0092-8674(21)00942-9. doi: 10.1016/j.cell.2021.07.039. Online ahead of print.

59. A Transcriptionally Distinct Subpopulation of Healthy Acinar Cells Exhibit Features of Pancreatic Progenitors and PDAC.
Gopalan V, Singh A, Rashidi Mehrabadi F, Wang L, Ruppin E, Arda HE, Hannenhalli S. Cancer Res. 2021 Aug 1;81(15):3958-3970. doi: 10.1158/0008-5472.CAN-21-0427. Epub 2021 May 28.

60. Acute SARS-CoV-2 infection is associated with an increased abundance of bacterial pathogens, including Pseudomonas aeruginosa in the nose.
Rhoades NS, Pinski AN, Monsibais AN, Jankeel A, Doratt BM, Cinco IR, Ibraim I, Messaoudi I. Cell Rep. 2021 Aug 13:109637. doi: 10.1016/j.celrep.2021.109637. Online ahead of print.

61. Bisection of the X chromosome disrupts the initiation of chromosome silencing during meiosis in Caenorhabditis elegans.
Rappaport Y, Achache H, Falk R, Murik O, Ram O, Tzur YB. Nat Commun. 2021 Aug 10;12(1):4802. doi: 10.1038/s41467-021-24815-0.

62. Mycobacterium tuberculosis VapC4 toxin engages small ORFs to initiate an integrated oxidative and copper stress response.
Barth VC, Chauhan U, Zeng J, Su X, Zheng H, Husson RN, Woychik NA. Proc Natl Acad Sci U S A. 2021 Aug 10;118(32):e2022136118. doi: 10.1073/pnas.2022136118.

63. Insulin and IGF-1 receptors regulate complex-I dependent mitochondrial bioenergetics and supercomplexes via FoxOs in muscle.
Bhardwaj G, Penniman CM, Jena J, Suarez Beltran PA, Foster C, Poro K, Junck TL, Hinton AO Jr, Souvenir R, Fuqua JD, Morales PE, Bravo-Sagua R, Sivitz WI, Lira VA, Abel ED, O'Neill BT. J Clin Invest. 2021 Aug 3:146415. doi: 10.1172/JCI146415. Online ahead of print.

64. The age of the bone marrow microenvironment influences B-cell acute lymphoblastic leukemia progression via CXCR5-CXCL13.
Zanetti C, Kumar R, Ender J, Godavarthy PS, Hartmann M, Hey J, Breuer K, Weissenberger ES, Minciacchi VR, Karantanou C, Gu Z, Roberts KG, Metzler M, Stock W, Mullighan CG, Bloomfield CD, Filmann N, Bankov K, Hartmann S, Hasserjian RP, Cousins AF, Halsey C, Plass C, Lipka DB, Krause DS. Blood. 2021 Aug 23:blood.2021011557. doi: 10.1182/blood.2021011557. Online ahead of print.

65. Loss of Mir146b with aging contributes to inflammation and mitochondrial dysfunction in thioglycollate-elicited peritoneal macrophages.
Santeford A, Lee AY, Sene A, Hassman LM, Sergushichev AA, Loginicheva E, Artyomov MN, Ruzycki PA, Apte RS. Elife. 2021 Aug 23;10:e66703. doi: 10.7554/eLife.66703. Online ahead of print.

66. AtHDA6 functions as an H3K18ac eraser to maintain pericentromeric CHG methylation in Arabidopsis thaliana.
Wang Q, Bao X, Chen S, Zhong H, Liu Y, Zhang L, Xia Y, Kragler F, Luo M, Li XD, Lam HM, Zhang S. Nucleic Acids Res. 2021 Aug 17:gkab706. doi: 10.1093/nar/gkab706. Online ahead of print.

67. CD11b(+) lung dendritic cells at different stages of maturation induce Th17 or Th2 differentiation.
Izumi G, Nakano H, Nakano K, Whitehead GS, Grimm SA, Fessler MB, Karmaus PW, Cook DN. Nat Commun. 2021 Aug 19;12(1):5029. doi: 10.1038/s41467-021-25307-x.