|
1. Human T cell generation is restored in CD3δ severe combined immunodeficiency through adenine base editing
McAuley GE et al. Cell. 2023 Mar 15:S0092-8674(23)00170-8. doi: 10.1016/j.cell.2023.02.027. Online ahead of print.
2. RNA splicing analysis using heterogeneous and large RNA-seq datasets
Vaquero-Garcia J et al. Nat Commun. 2023 Mar 3;14(1):1230. doi: 10.1038/s41467-023-36585-y.
3. Microfluidics-free single-cell genomics with templated emulsification
Clark IC et al. Nat Biotechnol. 2023 Mar 6. doi: 10.1038/s41587-023-01685-z. Online ahead of print.
4. Tumor PD-L1 engages myeloid PD-1 to suppress type I interferon to impair cytotoxic T lymphocyte recruitment
Klement JD et al. Cancer Cell. 2023 Mar 13;41(3):620-636.e9. doi: 10.1016/j.ccell.2023.02.005.
5. Single-cell RNA sequencing and spatial transcriptomics reveal cancer-associated fibroblasts in glioblastoma with protumoral effects
Jain S et al. J Clin Invest. 2023 Mar 1;133(5):e147087. doi: 10.1172/JCI147087.
6. RNA localization mechanisms transcend cell morphology
Goering R et al. Elife. 2023 Mar 3;12:e80040. doi: 10.7554/eLife.80040.
7. Integrative Single-Cell Analysis Reveals Transcriptional and Epigenetic Regulatory Features of Clear Cell Renal Cell Carcinoma
Yu Z et al. Cancer Res. 2023 Mar 2;83(5):700-719. doi: 10.1158/0008-5472.CAN-22-2224.
8. Single-cell chromatin accessibility and transcriptome atlas of mouse embryos
Jiang S et al. Cell Rep. 2023 Mar 6;42(3):112210. doi: 10.1016/j.celrep.2023.112210. Online ahead of print.
9. Well-TEMP-seq as a microwell-based strategy for massively parallel profiling of single-cell temporal RNA dynamics
Lin S et al. Nat Commun. 2023 Mar 7;14(1):1272. doi: 10.1038/s41467-023-36902-5.
10. In vivo RNA-seq and ChIP-seq analyses show an obligatory role for the C terminus of p53 in conferring tissue-specific radiation sensitivity
Resnick-Silverman L et al. Cell Rep. 2023 Mar 15;42(3):112216. doi: 10.1016/j.celrep.2023.112216. Online ahead of print.
11. Cancer-specific tissue-resident memory T-cells express ZNF683 in colorectal cancer
Kitakaze M et al. Br J Cancer. 2023 Mar 3. doi: 10.1038/s41416-023-02202-4. Online ahead of print.
12. Transcriptome analysis reveals tumor microenvironment changes in glioblastoma
Hoogstrate Y et al. Cancer Cell. 2023 Mar 3:S1535-6108(23)00047-8. doi: 10.1016/j.ccell.2023.02.019. Online ahead of print.
13. Single-cell characterization of anti-LAG-3 and anti-PD-1 combination treatment in patients with melanoma
Huuhtanen J et al. J Clin Invest. 2023 Mar 15;133(6):e164809. doi: 10.1172/JCI164809.
14. Functional annotation of the animal genomes: An integrated annotation resource for the horse
Peng S et al. PLoS Genet. 2023 Mar 2;19(3):e1010468. doi: 10.1371/journal.pgen.1010468. eCollection 2023 Mar.
15. Molecular and spatial profiling of the paraventricular nucleus of the thalamus
Gao C et al. Elife. 2023 Mar 3;12:e81818. doi: 10.7554/eLife.81818.
16. LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5' single-cell RNA-Seq
McKerrow W et al. Nucleic Acids Res. 2023 Mar 21;51(5):2033-2045. doi: 10.1093/nar/gkad049.
17. Capture RIC-seq reveals positional rules of PTBP1-associated RNA loops in splicing regulation
Ye R et al. Mol Cell. 2023 Mar 16:S1097-2765(23)00158-2. doi: 10.1016/j.molcel.2023.03.001. Online ahead of print.
18. SpliceTools, a suite of downstream RNA splicing analysis tools to investigate mechanisms and impact of alternative splicing
Flemington EK et al. Nucleic Acids Res. 2023 Mar 2:gkad111. doi: 10.1093/nar/gkad111. Online ahead of print.
19. Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton
Wang D et al. Genome Biol. 2023 Mar 14;24(1):49. doi: 10.1186/s13059-023-02886-0.
20. Tissue-specific regulation of gene expression via unproductive splicing
Mironov A et al. Nucleic Acids Res. 2023 Mar 13:gkad161. doi: 10.1093/nar/gkad161. Online ahead of print.
21. The RNA binding protein DND1 is elevated in a subpopulation of pro-spermatogonia and targets chromatin modifiers and translational machinery during late gestation
Ruthig VA et al. PLoS Genet. 2023 Mar 1;19(3):e1010656. doi: 10.1371/journal.pgen.1010656. eCollection 2023 Mar.
22. Interpretable and context-free deconvolution of multi-scale whole transcriptomic data with UniCell deconvolve
Charytonowicz D et al. Nat Commun. 2023 Mar 11;14(1):1350. doi: 10.1038/s41467-023-36961-8.
23. Intrapericardial long non-coding RNA-Tcf21 antisense RNA inducing demethylation administration promotes cardiac repair
Zhu D et al. Eur Heart J. 2023 Mar 14:ehad114. doi: 10.1093/eurheartj/ehad114. Online ahead of print.
24. A role for heritable transcriptomic variation in maize adaptation to temperate environments
Sun G et al. Genome Biol. 2023 Mar 24;24(1):55. doi: 10.1186/s13059-023-02891-3.
25. YAP1 and WWTR1 expression inversely correlates with neuroendocrine markers in Merkel cell carcinoma
Frost TC et al. J Clin Invest. 2023 Mar 1;133(5):e157171. doi: 10.1172/JCI157171.
26. The prophage-encoded transcriptional regulator AppY has pleiotropic effects on E. coli physiology
Derdouri N et al. PLoS Genet. 2023 Mar 17;19(3):e1010672. doi: 10.1371/journal.pgen.1010672. eCollection 2023 Mar.
27. Head-on and co-directional RNA polymerase collisions orchestrate bidirectional transcription termination
Wang L et al. Mol Cell. 2023 Mar 4:S1097-2765(23)00120-X. doi: 10.1016/j.molcel.2023.02.017. Online ahead of print.
28. Tn5 tagments and transposes oligos to single-stranded DNA for strand-specific RNA sequencing
Zhang Y et al. Genome Res. 2023 Mar 23. doi: 10.1101/gr.277213.122. Online ahead of print.
29. Species-specific regulation of XIST by the JPX/FTX orthologs
Rosspopoff O et al. Nucleic Acids Res. 2023 Mar 21;51(5):2177-2194. doi: 10.1093/nar/gkad029.
30. Trio RNA sequencing in a cohort of medically complex children
Deshwar AR et al. Am J Hum Genet. 2023 Mar 21:S0002-9297(23)00090-3. doi: 10.1016/j.ajhg.2023.03.006. Online ahead of print.
31. Sortilin enhances fibrosis and calcification in aortic valve disease by inducing interstitial cell heterogeneity
Iqbal F et al. Eur Heart J. 2023 Mar 7;44(10):885-898. doi: 10.1093/eurheartj/ehac818.
32. A therapeutically targetable TAZ-TEAD2 pathway drives the growth of hepatocellular carcinoma via ANLN and KIF23
Saito Y et al. Gastroenterology. 2023 Mar 7:S0016-5085(23)00235-4. doi: 10.1053/j.gastro.2023.02.043. Online ahead of print.
33. Nuclear m6A reader YTHDC1 promotes muscle stem cell activation/proliferation by regulating mRNA splicing and nuclear export
Qiao Y et al. Elife. 2023 Mar 9;12:e82703. doi: 10.7554/eLife.82703. Online ahead of print.
34. Systematic characterization of chromodomain proteins reveals an H3K9me1/2 reader regulating aging in C. elegans
Hou X et al. Nat Commun. 2023 Mar 6;14(1):1254. doi: 10.1038/s41467-023-36898-y.
35. Single-cell Profiling of Tumor Immune Microenvironment Reveals Immune Irresponsiveness in Gastric Signet-ring Cell Carcinoma
Chen J et al. Gastroenterology. 2023 Mar 13:S0016-5085(23)00262-7. doi: 10.1053/j.gastro.2023.03.008. Online ahead of print.
36. Reassessment of weak parent-of-origin expression bias shows it rarely exists outside of known imprinted regions
Edwards CA et al. Elife. 2023 Mar 14;12:e83364. doi: 10.7554/eLife.83364. Online ahead of print.
37. Transcriptomic atlas and interaction networks of brain cells in mouse CNS demyelination and remyelination
Hou J et al. Cell Rep. 2023 Mar 21;42(4):112293. doi: 10.1016/j.celrep.2023.112293. Online ahead of print.
38. Temporal multimodal single-cell profiling of native hematopoiesis illuminates altered differentiation trajectories with age
Konturek-Ciesla A et al. Cell Rep. 2023 Mar 23;42(4):112304. doi: 10.1016/j.celrep.2023.112304. Online ahead of print.
39. RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins
Stenum TS et al. Nucleic Acids Res. 2023 Mar 29:gkad216. doi: 10.1093/nar/gkad216. Online ahead of print.
40. A field-wide assessment of differential expression profiling by high-throughput sequencing reveals widespread bias
Päll T et al. PLoS Biol. 2023 Mar 2;21(3):e3002007. doi: 10.1371/journal.pbio.3002007. eCollection 2023 Mar.
41. MBTPS2 acts as a regulator of lipogenesis and cholesterol synthesis through SREBP signalling in prostate cancer
Tibbo AJ et al. Br J Cancer. 2023 Mar 29. doi: 10.1038/s41416-023-02237-7. Online ahead of print.
42. The shaky foundations of simulating single-cell RNA sequencing data
Crowell HL et al. Genome Biol. 2023 Mar 29;24(1):62. doi: 10.1186/s13059-023-02904-1.
43. Lost in local translation: TDP-43 and FUS in axonal/neuromuscular junction maintenance and dysregulation in amyotrophic lateral sclerosis
Piol D et al. Neuron. 2023 Mar 23:S0896-6273(23)00132-0. doi: 10.1016/j.neuron.2023.02.028. Online ahead of print.
44. Downregulation of Hsp90 and the antimicrobial peptide Mtk suppresses poly(GR)-induced neurotoxicity in C9ORF72-ALS/FTD
Lee S et al. Neuron. 2023 Mar 10:S0896-6273(23)00133-2. doi: 10.1016/j.neuron.2023.02.029. Online ahead of print.
45. Conserved transcription factors promote cell fate stability and restrict reprogramming potential in differentiated cells
Missinato MA et al. Nat Commun. 2023 Mar 27;14(1):1709. doi: 10.1038/s41467-023-37256-8.
46. APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge
Lee S et al. Cell Rep. 2023 Mar 3;42(3):112196. doi: 10.1016/j.celrep.2023.112196. Online ahead of print.
47. Femtosecond laser microdissection for isolation of regenerating C. elegans neurons for single-cell RNA sequencing
Zhao P et al. Nat Methods. 2023 Mar 16. doi: 10.1038/s41592-023-01804-3. Online ahead of print.
48. Integrated transcriptome study of the tumor microenvironment for treatment response prediction in male predominant hypopharyngeal carcinoma
Zhang Y et al. Nat Commun. 2023 Mar 16;14(1):1466. doi: 10.1038/s41467-023-37159-8.
49. NNMT enriches for AQP5(+) cancer stem cells to drive malignant progression in early gastric cardia adenocarcinoma
Wang Z et al. Gut. 2023 Mar 28:gutjnl-2022-328408. doi: 10.1136/gutjnl-2022-328408. Online ahead of print.
50. The pre-existing T cell landscape determines the response to bispecific T cell engagers in multiple myeloma patients
Friedrich MJ et al. Cancer Cell. 2023 Mar 9:S1535-6108(23)00036-3. doi: 10.1016/j.ccell.2023.02.008. Online ahead of print.
51. Prolonged response after TPO-RA discontinuation in primary ITP: results of a prospective multicenter study
Guillet S et al. Blood. 2023 Mar 9:blood.2022018665. doi: 10.1182/blood.2022018665. Online ahead of print.
52. An intellectual disability-related MED23 mutation dysregulates gene expression by altering chromatin conformation and enhancer activities
Yang Y et al. Nucleic Acids Res. 2023 Mar 21;51(5):2137-2150. doi: 10.1093/nar/gkad025.
53. A novel gene REPTOR2 activates the autophagic degradation of wing disc in pea aphid
Yuan E et al. Elife. 2023 Mar 21;12:e83023. doi: 10.7554/eLife.83023.
54. Targeting the fatty acid binding proteins disrupts multiple myeloma cell cycle progression and MYC signalin
Farrell M et al. Elife. 2023 Mar 7;12:e81184. doi: 10.7554/eLife.81184.
55. LncRNA HOTAIRM1 functions in DNA double-strand break repair via its association with DNA repair and mRNA surveillance factors
Chuang TW et al. Nucleic Acids Res. 2023 Mar 7:gkad143. doi: 10.1093/nar/gkad143. Online ahead of print.
56. Vasostatin-2 associates with coronary collateral vessel formation in diabetic patients and promotes angiogenesis via angiotensin-converting enzyme 2
Bao XL et al. Eur Heart J. 2023 Mar 2:ehad082. doi: 10.1093/eurheartj/ehad082. Online ahead of print.
57. Clinically important alterations in pharmacogene expression in histologically severe nonalcoholic fatty liver disease
Powell NR et al. Nat Commun. 2023 Mar 17;14(1):1474. doi: 10.1038/s41467-023-37209-1.
58. Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention
Ullah F et al. Genome Biol. 2023 Mar 22;24(1):53. doi: 10.1186/s13059-023-02885-1.
59. Elevated L1 expression in ataxia telangiectasia likely explained by an RNA-seq batch effect
Faulkner GJ et al. Neuron. 2023 Mar 1;111(5):610-611. doi: 10.1016/j.neuron.2023.02.007.
60. Response to: Elevated L1 expression in ataxia telangiectasia likely explained by an RNA-seq batch effect
Takahashi T et al. Neuron. 2023 Mar 1;111(5):612-613. doi: 10.1016/j.neuron.2023.02.006.
61. Single-nuclei RNA sequencing (snRNA-seq) uncovers trophoblast cell types and lineages in the mature bovine placenta
Davenport KM et al. Proc Natl Acad Sci U S A. 2023 Mar 21;120(12):e2221526120. doi: 10.1073/pnas.2221526120. Epub 2023 Mar 13.
62. A multi-organoid platform identifies CIART as a key factor for SARS-CoV-2 infection
Tang X et al. Nat Cell Biol. 2023 Mar;25(3):381-389. doi: 10.1038/s41556-023-01095-y. Epub 2023 Mar 13.
63. Intestinal cell type-specific communication networks underlie homeostasis and response to Western diet
Wang YC et al. J Exp Med. 2023 May 1;220(5):e20221437. doi: 10.1084/jem.20221437. Epub 2023 Mar 7.
64. Transcription shapes 3D chromatin organization by interacting with loop extrusion
Banigan EJ et al. Proc Natl Acad Sci U S A. 2023 Mar 14;120(11):e2210480120. doi: 10.1073/pnas.2210480120. Epub 2023 Mar 10.
65. Salivary carbonic anhydrase II in winged aphid morph facilitates plant infection by viruses
Guo H et al. Proc Natl Acad Sci U S A. 2023 Apr 4;120(14):e2222040120. doi: 10.1073/pnas.2222040120. Epub 2023 Mar 28.
|
