1. Synthesis of point-modified mRNA Hertler J et al. Nucleic Acids Res. 2022 Sep 5:gkac719. doi: 10.1093/nar/gkac719. Online ahead of print.
2. Landscape and age dynamics of immune cells in the Egyptian rousette bat Friedrichs V et al. Cell Rep. 2022 Sep 6;40(10):111305. doi: 10.1016/j.celrep.2022.111305.
3. Identifying ribosome heterogeneity using ribosome profiling Alkan F et al. Nucleic Acids Res. 2022 Sep 9;50(16):e95. doi: 10.1093/nar/gkac484.
4. Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing Simmons SK et al. Nat Biotechnol. 2022 Sep 15. doi: 10.1038/s41587-022-01452-6. Online ahead of print.
5. Genome-wide fetalization of enhancer architecture in heart disease Spurrell CH et al. Cell Rep. 2022 Sep 20;40(12):111400. doi: 10.1016/j.celrep.2022.111400.
6. HTCA: a database with an in-depth characterization of the single-cell human transcriptome Pan L et al. Nucleic Acids Res. 2022 Sep 21:gkac791. doi: 10.1093/nar/gkac791. Online ahead of print.
7. 3D chromatin maps of the human pancreas reveal lineage-specific regulatory architecture of T2D risk Su C et al. Cell Metab. 2022 Sep 6;34(9):1394-1409.e4. doi: 10.1016/j.cmet.2022.08.014.
8. Removing unwanted variation from large-scale RNA sequencing data with PRPS Molania R et al. Nat Biotechnol. 2022 Sep 15. doi: 10.1038/s41587-022-01440-w. Online ahead of print.
9. RUV-III-NB: normalization of single cell RNA-seq data Salim A et al. Nucleic Acids Res. 2022 Sep 9;50(16):e96. doi: 10.1093/nar/gkac486.
10. Sensitisation of cancer cells to radiotherapy by serine and glycine starvation Falcone M et al. Br J Cancer. 2022 Sep 17. doi: 10.1038/s41416-022-01965-6. Online ahead of print.
11. Unraveling the epigenomic and transcriptomic interplay during alcohol-induced anxiolysis Krishnan HR et al. Mol Psychiatry. 2022 Sep 12. doi: 10.1038/s41380-022-01732-2. Online ahead of print.
12. ISSAAC-seq enables sensitive and flexible multimodal profiling of chromatin accessibility and gene expression in single cells Xu W et al. Nat Methods. 2022 Sep 15. doi: 10.1038/s41592-022-01601-4. Online ahead of print.
13. Single-cell transcriptomics identifies conserved regulators of neuroglandular lineages Steger J et al. Cell Rep. 2022 Sep 20;40(12):111370. doi: 10.1016/j.celrep.2022.111370.
14. Modeling human multi-lineage heart field development with pluripotent stem cells Yang D et al. Cell Stem Cell. 2022 Sep 1;29(9):1382-1401.e8. doi: 10.1016/j.stem.2022.08.007.
15. The germ cell-specific RNA binding protein RBM46 is essential for spermatogonial differentiation in mice Peart NJ et al. PLoS Genet. 2022 Sep 21;18(9):e1010416. doi: 10.1371/journal.pgen.1010416. Online ahead of print.
16. Control of ribosomal RNA synthesis by hematopoietic transcription factors Antony C et al. Mol Cell. 2022 Sep 9:S1097-2765(22)00847-4. doi: 10.1016/j.molcel.2022.08.027. Online ahead of print.
17. Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data Zhang MJ et al. Nat Genet. 2022 Sep 1. doi: 10.1038/s41588-022-01167-z. Online ahead of print.
18. Primary and metastatic tumors exhibit systems-level differences in dependence on mitochondrial respiratory function Bennett NK et al. PLoS Biol. 2022 Sep 22;20(9):e3001753. doi: 10.1371/journal.pbio.3001753. eCollection 2022 Sep.
19. Comprehensive and scalable quantification of splicing differences with MntJULiP Yang G et al. Genome Biol. 2022 Sep 14;23(1):195. doi: 10.1186/s13059-022-02767-y.
20. Analysis of queuosine and 2-thio tRNA modifications by high throughput sequencing Katanski CD et al. Nucleic Acids Res. 2022 Sep 23;50(17):e99. doi: 10.1093/nar/gkac517.
21. H3K9me1/2 methylation limits the lifespan of daf-2 mutants in C. elegans Huang M et al. Elife. 2022 Sep 20;11:e74812. doi: 10.7554/eLife.74812.
22. Mutant p53 gain of function mediates cancer immune escape that is counteracted by APR-246 Zhou X et al. Br J Cancer. 2022 Sep 22. doi: 10.1038/s41416-022-01971-8. Online ahead of print.
23. Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling Zimmerman SM et al. Genome Res. 2022 Sep 13:gr.276206.121. doi: 10.1101/gr.276206.121. Online ahead of print.
24. Genome-wide DNA hypermethylation opposes healing in patients with chronic wounds by impairing epithelial-mesenchymal transition Singh K et al. J Clin Invest. 2022 Sep 1;132(17):e157279. doi: 10.1172/JCI157279.
25. Decoding the Spermatogenesis Program: New Insights from Transcriptomic Analyses Rabbani M et al. Annu Rev Genet. 2022 Sep 7. doi: 10.1146/annurev-genet-080320-040045. Online ahead of print.
26. GCN2 eIF2 kinase promotes prostate cancer by maintaining amino acid homeostasis Cordova RA et al. Elife. 2022 Sep 15;11:e81083. doi: 10.7554/eLife.81083. Online ahead of print.
27. Changes in chromatin accessibility are not concordant with transcriptional changes for single-factor perturbations Kiani K et al. Mol Syst Biol. 2022 Sep;18(9):e10979. doi: 10.15252/msb.202210979.
28. CST6 suppresses osteolytic bone disease in multiple myeloma by blocking osteoclast differentiation Gai D et al. J Clin Invest. 2022 Sep 15;132(18):e159527. doi: 10.1172/JCI159527.
29. Aging is associated with increased chromatin accessibility and reduced polymerase pausing in liver Bozukova M et al. Mol Syst Biol. 2022 Sep;18(9):e11002. doi: 10.15252/msb.202211002.
30. DNMT3A mutations define a unique biological and prognostic subgroup associated with cytotoxic T cells in PTCL-NOS Herek TA et al. Blood. 2022 Sep 15;140(11):1278-1290. doi: 10.1182/blood.2021015019.
31. Clustering by measuring local direction centrality for data with heterogeneous density and weak connectivity Peng D et al. Nat Commun. 2022 Sep 16;13(1):5455. doi: 10.1038/s41467-022-33136-9.
32. Widespread autogenous mRNA-protein interactions detected by CLIP-seq Kapral TH et al. Nucleic Acids Res. 2022 Sep 23;50(17):9984-9999. doi: 10.1093/nar/gkac756.
33. Autophagy-linked plasma and lysosomal membrane protein PLAC8 is a key host factor for SARS-CoV-2 entry into human cells Ugalde AP et al. EMBO J. 2022 Sep 19:e110727. doi: 10.15252/embj.2022110727. Online ahead of print.
34. A family of C. elegans VASA homologs control Argonaute pathway specificity and promote transgenerational silencing Dai S et al. Cell Rep. 2022 Sep 6;40(10):111265. doi: 10.1016/j.celrep.2022.111265.
35. Selective ablation of 3' RNA ends and processive RTs facilitate direct cDNA sequencing of full-length host cell and viral transcripts Gallardo CM et al. Nucleic Acids Res. 2022 Sep 23;50(17):e98. doi: 10.1093/nar/gkac516.
36. Anther Development - The Long Road to Making Pollen Marchant DB et al. Plant Cell. 2022 Sep 22:koac287. doi: 10.1093/plcell/koac287. Online ahead of print.
37. Context-dependent roles of Hes1 in the adult pancreas and pancreatic tumor formation Marui S et al. Gastroenterology. 2022 Sep 5:S0016-5085(22)01030-7. doi: 10.1053/j.gastro.2022.08.048. Online ahead of print.
38. Mammography radiomics features at diagnosis and progression-free survival among patients with breast cancer Luo C et al. Br J Cancer. 2022 Sep 1. doi: 10.1038/s41416-022-01958-5. Online ahead of print.
39. Longitudinal analysis reveals age-related changes in the T cell receptor repertoire of human T cell subsets Sun X et al. J Clin Invest. 2022 Sep 1;132(17):e158122. doi: 10.1172/JCI158122.
40. Multi-context genetic modeling of transcriptional regulation resolves novel disease loci Thompson M et al. Nat Commun. 2022 Sep 28;13(1):5704. doi: 10.1038/s41467-022-33212-0.
41. Tnpo3 enables EBF1 function in conditions of antagonistic Notch signaling Bayer M et al. Genes Dev. 2022 Sep 27. doi: 10.1101/gad.349696.122. Online ahead of print.
42. Integrative multi-omics landscape of fluoxetine action across 27 brain regions reveals global increase in energy metabolism and region-specific chromatin remodelling Rayan NA et al. Mol Psychiatry. 2022 Sep 2. doi: 10.1038/s41380-022-01725-1. Online ahead of print.
43. Resurrecting essential amino acid biosynthesis in mammalian cells Trolle J et al. Elife. 2022 Sep 27;11:e72847. doi: 10.7554/eLife.72847. Online ahead of print.
44. Ablating Lgr5-expressing prostatic stromal cells activates the ERK-mediated mechanosensory signaling and disrupts prostate tissue homeostasis Wei X et al. Cell Rep. 2022 Sep 6;40(10):111313. doi: 10.1016/j.celrep.2022.111313.
45. Long-read single-molecule RNA structure sequencing using nanopore Bizuayehu TT et al. Nucleic Acids Res. 2022 Sep 27:gkac775. doi: 10.1093/nar/gkac775. Online ahead of print.
46. PRC2-indepdendent actions of H3.3K27M in embryonic stem cell differentiation Cohen LRZ et al. Nucleic Acids Res. 2022 Sep 26:gkac800. doi: 10.1093/nar/gkac800. Online ahead of print.
47. Genomic and biological study of fusion genes as resistance mechanisms to EGFR inhibitors Kobayashi Y et al. Nat Commun. 2022 Sep 24;13(1):5614. doi: 10.1038/s41467-022-33210-2.
48. Haplotype-aware analysis of somatic copy number variations from single -cell transcriptomes Gao T et al. Nat Biotechnol. 2022 Sep 26. doi: 10.1038/s41587-022-01468-y. Online ahead of print.
49. Normalizing cancer RNA-seq data for library size, tumor purity and batch effects et al. Nat Biotechnol. 2022 Sep 23. doi: 10.1038/s41587-022-01441-9. Online ahead of print.
50. FIONA1-mediated methylation of the 3'UTR of FLC affects FLC transcript levels and flowering in Arabidopsis Sun B et al. PLoS Genet. 2022 Sep 27;18(9):e1010386. doi: 10.1371/journal.pgen.1010386. Online ahead of print.
51. Human NOP2/NSUN1 regulates ribosome biogenesis through non-catalytic complex formation with box C/D snoRNPs Liao H et al. Nucleic Acids Res. 2022 Sep 26:gkac817. doi: 10.1093/nar/gkac817. Online ahead of print.
52. Highly sensitive single-cell chromatin accessibility assay and transcriptome coassay with METATAC Wu H et al. Proc Natl Acad Sci U S A. 2022 Oct 4;119(40):e2206450119. doi: 10.1073/pnas.2206450119. Epub 2022 Sep 26.
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