| Latest Papers(RNA-Seq Part) |
1. Benchmarking component choices for unpaired single cell RNA and epigenomic integration
Naqing F et al. Genome Biol. 2026 Apr 15. doi: 10.1186/s13059-026-04071-5. Online ahead of print.
2. RNA-induced PRC2 inhibition depends on the sequence of bound RNA
Song J et al. Nat Commun. 2026 Apr 23. doi: 10.1038/s41467-026-72294-y. Online ahead of print.
3. Molecular and functional dissection using CaMPARI-seq reveals the neuronal organization for dissociating optic flow-dependent behaviors
Matsuda K et al. Nat Commun. 2026 Apr 17;17(1):3411. doi: 10.1038/s41467-026-71371-6.
4. Multimodal analysis reveals cellular diversity and divergent circuits of the zona incerta
Kast R et al. Proc Natl Acad Sci U S A. 2026 May 5;123(18):e2509781123. doi: 10.1073/pnas.2509781123. Epub 2026 Apr 29.
5. Single nucleus RNA sequencing and functional in vivo studies reveal TCF21 as a protective regulator in cardiac fibrosis
Azmain T et al. Cardiovasc Res. 2026 Apr 2:cvag050. doi: 10.1093/cvr/cvag050. Online ahead of print.
6. Targeted long-read RNA sequencing for rare disease diagnosis and variant interpretation
Wang R et al. Sci Adv. 2026 Apr 17;12(16):eady9895. doi: 10.1126/sciadv.ady9895. Epub 2026 Apr 15.
7. Novel CuCLIP-seq for in situ covalently captured protein-binding RNAs
Wang X et al. Nat Commun. 2026 Apr 24. doi: 10.1038/s41467-026-72350-7. Online ahead of print.
8. Comprehensive assessment of transcriptome assembly quality using CATS
Bodulić K et al. Nat Commun. 2026 Apr 20. doi: 10.1038/s41467-026-72171-8. Online ahead of print.
9. Imputing causality and clonal dynamics from single-cell transcriptomics in paroxysmal nocturnal hemoglobinuria
Mizumaki H et al. Leukemia. 2026 Apr 22. doi: 10.1038/s41375-026-02914-5. Online ahead of print.
10. 2-Cys peroxiredoxins and the chaperone cpHSP70 act in concert in chloroplast biogenesis in Arabidopsis seedlings
Rodríguez-Marín F et al. Plant Cell. 2026 Apr 3;38(4):koag096. doi: 10.1093/plcell/koag096.
11. Long-read assembly reveals vast transcriptional complexity in the placenta associated with metabolic and endocrine function
Bresnahan ST et al. Nat Commun. 2026 Apr 2. doi: 10.1038/s41467-026-71303-4. Online ahead of print.
12. The role of Pth1r in posterior cranium cartilage regulation and craniosynostosis
Amano K et al. Nat Commun. 2026 Apr 28. doi: 10.1038/s41467-026-71797-y. Online ahead of print.
13. High-content CRISPR activation screens identify synthetically lethal RNA-based mechanisms to sensitize cancer cells to targeted T cell cytotoxicity
Akana RV et al. Nat Genet. 2026 Apr;58(4):841-853. doi: 10.1038/s41588-026-02561-7. Epub 2026 Apr 7.
14. Vascular STING activation facilitates NK cell anti-tumor immunity in small cell lung cancer
Campisi M et al. Cancer Cell. 2026 Apr 13;44(4):858-878.e16. doi: 10.1016/j.ccell.2026.02.008. Epub 2026 Mar 5.
15. Integrative proteogenomics maps multifactorial aetiology, progression and therapeutic vulnerabilities in gastric cancer
Chang YH et al. Gut. 2026 Apr 7;75(5):886-904. doi: 10.1136/gutjnl-2025-337247.
16. CrossFilt: a cross-species filtering tool that eliminates alignment bias in comparative genomics studies of primates
Barr KA et al. Genome Biol. 2026 Apr 23. doi: 10.1186/s13059-026-04082-2. Online ahead of print.
17. A meta-analysis of single-nucleus expression quantitative trait loci linking genetic risk to brain disorders
Jang B et al. Nat Genet. 2026 Apr;58(4):737-747. doi: 10.1038/s41588-026-02541-x. Epub 2026 Mar 19.
18. Identification of synovial lymphatic system in the temporomandibular joint and their roles in arthritis and pain
Shu Y et al. Nat Commun. 2026 Apr 25. doi: 10.1038/s41467-026-72400-0. Online ahead of print.
19. NEXT-scASV: A Nextflow Pipeline for Allele-Specific Variants Calling from single cell RNA-seq data
Shevtsov A et al. Gigascience. 2026 Apr 6:giag042. doi: 10.1093/gigascience/giag042. Online ahead of print.
20. GEfetch2R: fetching single-cell/bulk RNA-seq data from public repositories to R and benchmarking the subsequent format conversion tools
Song Y et al. Gigascience. 2026 Apr 8:giag039. doi: 10.1093/gigascience/giag039. Online ahead of print.
21. Single-cell transcriptomics reveals FXR1 as an actionable target for siRNA therapy in ovarian cancer
George J et al. Nat Commun. 2026 Apr 3. doi: 10.1038/s41467-026-71468-y. Online ahead of print.
22. A sequence knowledge-guided deep learning method for single-cell multi-omics translation
Zhao M et al. Genome Biol. 2026 Apr 14. doi: 10.1186/s13059-026-04070-6. Online ahead of print.
23. Non-destructive transcriptomics via vesicular export
Armbrust N et al. Nat Commun. 2026 Apr 25;17(1):3812. doi: 10.1038/s41467-026-72072-w.
24. Whole-proteome phage immunoprecipitation sequencing reveals germ cell tumor-specific immunosignature
Hammami MB et al. Nat Commun. 2026 Apr 1. doi: 10.1038/s41467-026-71174-9. Online ahead of print.
25. Herpes simplex virus type 1 R-loops are targets for APOBEC-mediated mutagenesis
Miskei M et al. Genome Biol. 2026 Apr 14. doi: 10.1186/s13059-026-04078-y. Online ahead of print.
26. Wounding activates the HSFA1 transcription factors to promote cellular reprogramming in Arabidopsis
Coleman D et al. Plant Cell. 2026 Apr 22:koag124. doi: 10.1093/plcell/koag124. Online ahead of print.
27. Spatial multi-omics unveils the monoclonal origin, neuroendocrine plasticity, and microenvironment niches in combined small-cell lung cancer
Wang Z et al. Cell Rep Med. 2026 Apr 21;7(4):102741. doi: 10.1016/j.xcrm.2026.102741. Epub 2026 Apr 10.
28. A high-resolution spatial map of cilia-associated proteins in the human fallopian tube
Hikmet F et al. Nat Commun. 2026 Apr 20;17(1):3616. doi: 10.1038/s41467-026-71692-6.
29. Single-cell analysis highlights the significance of malignant cell IFN/MHC-II for immunotherapy response in head and neck squamous cell carcinoma
Mints M et al. Cell Rep Med. 2026 Apr 21;7(4):102715. doi: 10.1016/j.xcrm.2026.102715. Epub 2026 Mar 31.
30. SpaPheno: linking spatial transcriptomics to clinical phenotypes with interpretable machine learning
Duan B et al. Genome Med. 2026 Apr 13. doi: 10.1186/s13073-026-01645-7. Online ahead of print.
31. BpFLC coordinates seasonal and age-related flowering in Betula platyphylla through environmental cues and epigenetic regulation
Liu Y et al. Proc Natl Acad Sci U S A. 2026 Apr 14;123(15):e2518761123. doi: 10.1073/pnas.2518761123. Epub 2026 Apr 6.
32. A single-cell and spatial atlas of early human olfactory development
Mbouamboua Y et al. Nat Commun. 2026 Apr 17;17(1):3537. doi: 10.1038/s41467-026-71595-6.
33. FaNUDT19 contributes to 5' cap quality control by modulating NAD+ capped RNA dynamics during strawberry fruit ripening
Ma Q et al. Plant Cell. 2026 Apr 6:koag102. doi: 10.1093/plcell/koag102. Online ahead of print.
34. Dietary conjugated linoleic acid enhances resistance to Salmonella infection by promoting PPARγ-mediated metabolic reprogramming and effector function in CD8⁺ T cells
Deng L et al. Gut Microbes. 2026 Dec 31;18(1):2657625. doi: 10.1080/19490976.2026.2657625. Epub 2026 Apr 10.
35. MLL4/KMT2D histone methyltransferase and JUNB cooperate in a feed-forward loop to support AP-1-dependent TGF-β signaling
Chan TEH et al. Genes Dev. 2026 Apr 24. doi: 10.1101/gad.353313.125. Online ahead of print.
36. Gene expression-based dissemination score predicts early spread and poor outcomes in multiple myeloma
Bohra A et al. Leukemia. 2026 Apr 22. doi: 10.1038/s41375-026-02931-4. Online ahead of print.
37. Experimental and computational methods for allelic imbalance analysis from single-nucleus RNA-seq data
Simmons SK et al. Genome Biol. 2026 Apr 11. doi: 10.1186/s13059-026-04062-6. Online ahead of print.
38. scSurvival: Single-Cell Survival Analysis of Clinical Cancer Cohort Data at Cellular Resolution
Ren T et al. Cancer Discov. 2026 Apr 21:OF1-OF22. doi: 10.1158/2159-8290.CD-25-0965. Online ahead of print.
39. Pervasive non-triplet alternative splicing drives functional isoform diversity
Athavudeen S et al. Nat Commun. 2026 Apr 10. doi: 10.1038/s41467-026-71615-5. Online ahead of print.
40. Spatial transcriptomics reveals a molecular tumor budding signature in head and neck cancer
Ourailidis I et al. Genome Med. 2026 Apr 15;18(1):43. doi: 10.1186/s13073-026-01612-2.
41. Multi-omics reveal vitamin D regulation of immune-gut microbiome interactions and tolerogenic pathways in inflammatory bowel disease
Gubatan J et al. Cell Rep Med. 2026 Apr 21;7(4):102703. doi: 10.1016/j.xcrm.2026.102703. Epub 2026 Mar 26.
42. Single-Cell RNA-seq Analysis Reveals Distinct Tumor and Immunosuppressive T-Cell Phenotypes in Patients with CLL Treated with Ibrutinib
Thangavadivel S et al. Clin Cancer Res. 2026 Apr 22:OF1-OF13. doi: 10.1158/1078-0432.CCR-25-3349. Online ahead of print.
43. A simple cell-cycle control system in Marchantia polymorpha provides a framework for understanding plant cell proliferation
Romani F et al. Plant Cell. 2026 Apr 9:koag103. doi: 10.1093/plcell/koag103. Online ahead of print.
44. Circulating extracellular vesicle long RNA profiling combined with machine learning unveils novel diagnostic signature and molecular features in chronic pancreatitis
Cao Y et al. Gut. 2026 Apr 16:gutjnl-2025-335957. doi: 10.1136/gutjnl-2025-335957. Online ahead of print.
45. Assembling unmapped reads reveals hidden variation in South Asian genomes
Das A et al. Nat Commun. 2026 Apr 10. doi: 10.1038/s41467-026-71755-8. Online ahead of print.
46. Single-cell omics and flow cytometry identify distinct immune states of dural and brain-infiltrating IL-17-producing γδ T cells after experimental stroke
Zha M et al. J Neuroinflammation. 2026 Apr 9;23(1):127. doi: 10.1186/s12974-026-03794-3.
|
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