(2021년 5월) RNA-Seq 관련 논문 및 바이오뉴스
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| Recent Papers(RNA-Seq Part) | ||
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Apolipoprotein E4 and meningeal lymphatics in Alzheimer disease: a conceptual framework. 2.
Glial cell diversity and methamphetamine-induced neuroinflammation in human cerebral organoids. 3.
Morphine coordinates SST and PV interneurons in the prelimbic cortex to disinhibit pyramidal neurons and enhance reward. 4.
Single-Cell Transcriptional Survey of Ileal-Anal Pouch Immune Cells From Ulcerative Colitis Patients. 5.
Location-specific cell identity rather than exposure to GI microbiota defines many innate immune signalling cascades in the gut epithelium. 6.
Allele-specific expression and high-throughput reporter assay reveal functional genetic variants associated with alcohol use disorders. 7.
BCL3 couples cancer stem cell enrichment with pancreatic cancer molecular subtypes. 8.
Modular, efficient and constant-memory single-cell RNA-seq preprocessing. 9.
Integrated mutational landscape analysis of uterine leiomyosarcomas. 10.
How should we define mammary stem cells?. 11.
Characterizing Transcriptional Regulatory Sequences in Coronaviruses and Their Role in Recombination. 12.
A unified atlas of CD8 T cell dysfunctional states in cancer and infection. 13.
Linear-time cluster ensembles of large-scale single-cell RNA-seq and multimodal data. 14.
CASB: a concanavalin A-based sample barcoding strategy for single-cell sequencing. 15.
A compendium and comparative epigenomics analysis of cis-regulatory elements in the pig genome. 16.
ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics. 17.
A single-cell resolution developmental atlas of hematopoietic stem and progenitor cell expansion in zebrafish. 18.
Alignment of single-cell RNA-seq samples without overcorrection using kernel density matching. 19.
Automated quality control and cell identification of droplet-based single-cell data using dropkick. 20.
A high-resolution protein architecture of the budding yeast genome. 21.
Skin-resident innate lymphoid cells converge on a pathogenic effector state. 22.
Mouse aging cell atlas analysis reveals global and cell type-specific aging signatures. 23.
Mutant p53 regulates Survivin to foster lung metastasis. 24.
MondoA-TXNIP axis maintains regulatory T cell identity and function in colorectal cancer microenvironment. 25.
Role of Hakai in m(6)A modification pathway in Drosophila. 26.
A benchmark for RNA-seq deconvolution analysis under dynamic testing environments. 27.
Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning. 28.
Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench. 29.
High-content, targeted RNA-seq screening in organoids for drug discovery in colorectal cancer. 30.
Multi-cell type gene coexpression network analysis reveals coordinated interferon response and cross-cell type correlations in systemic lupus erythematosus. 31.
A bacterial small RNA regulates the adaptation of Helicobacter pylori to the host environment. 32.
Negative elongation factor regulates muscle progenitor expansion for efficient myofiber repair and stem cell pool repopulation. 33.
COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas. 34.
Profiling of RNA ribose methylation in Arabidopsis thaliana. 35.
Quantitative mapping of the cellular small RNA landscape with AQRNA-seq. 36.
BABEL enables cross-modality translation between multiomic profiles at single-cell resolution. 37.
Comprehensive characterization of tissue-specific chromatin accessibility in L2 C. elegans nematodes. 38.
A single-cell analysis of the Arabidopsis vegetative shoot apex. 39.
A GATA6-centred gene regulatory network involving HNFs and ΔNp63 controls plasticity and immune escape in pancreatic cancer. 40.
Wnt/β-catenin pathway and cell adhesion deregulation in CSDE1-related intellectual disability and autism spectrum disorders. 41.
Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney. 42.
Spinal macrophages resolve nociceptive hypersensitivity after peripheral injury. 43.
Ultrafast functional profiling of RNA-seq data for nonmodel organisms. 44.
Uncovering transcriptional dark matter via gene annotation independent single-cell RNA sequencing analysis. 45.
Proteogenomic and metabolomic characterization of human glioblastoma. 46.
PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications. 47.
User-friendly, scalable tools and workflows for single-cell RNA-seq analysis. 48.
Quantitative nucleotide resolution profiling of RNA cytidine acetylation by ac4C-seq. 49.
Presence of complete murine viral genome sequences in patient-derived xenografts. 50.
Spatial tissue profiling by imaging-free molecular tomography. 51.
Linking the dynamics of chromatin occupancy and transcription with predictive models. 52.
DDX3 depletion represses translation of mRNAs with complex 5' UTRs. 53.
Single-cell profiling of myeloid cells in glioblastoma across species and disease stage reveals macrophage competition and specialization. 54.
Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease. 55.
Early stem cell aging in the mature brain. 56.
Insights Gained from Single-Cell Analysis of Immune Cells in the Tumor Microenvironment. 57.
Rituximab-resistant splenic memory B cells and newly engaged naive B cells fuel relapses in patients with immune thrombocytopenia. 58.
Analysis of classical neutrophils and polymorphonuclear myeloid-derived suppressor cells in cancer patients and tumor-bearing mice. 59.
An early cell shape transition drives evolutionary expansion of the human forebrain. 60.
Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome. 61.
Analysis of cell-type-specific chromatin modifications and gene expression in Drosophila neurons that direct reproductive behavior. 62.
Differentiation reveals latent features of aging and an energy barrier in murine myogenesis. 63.
Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage. 64.
Clonal multi-omics reveals Bcor as a negative regulator of emergency dendritic cell development. 65.
Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics. 66.
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission. 67.
Bayesian estimation of cell type-specific gene expression with prior derived from single-cell data. 68.
Systemic CLIP-seq analysis and game theory approach to model microRNA mode of binding. 69.
Single-cell transcriptomics reveals involution mimicry during the specification of the basal breast cancer subtype. 70.
Analysis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (Grad-seq). 71.
Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes. 72.
Common virulence gene expression in adult first-time infected malaria patients and severe cases. 73.
Tracking pre-mRNA maturation across subcellular compartments identifies developmental gene regulation through intron retention and nuclear anchoring. 74.
High-dimensional profiling clusters asthma severity by lymphoid and non-lymphoid status. 75.
Implication of repeat insertion domains in the trans-activity of the long non-coding RNA ANRIL. 76.
Crucial role of Salmonella genomic island 1 master activator in the parasitism of IncC plasmids. 77.
NusG is an intrinsic transcription termination factor that stimulates motility and coordinates gene expression with NusA. 78.
DNA methylation patterns expose variations in enhancer-chromatin modifications during embryonic stem cell differentiation. 79.
Heterozygous ANKRD17 loss-of-function variants cause a syndrome with intellectual disability, speech delay, and dysmorphism. |
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| Recent Bio-News | ||
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1.
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