(2020년 12월) RNA-Seq 관련 논문 및 바이오뉴스
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| Recent Papers(RNA-Seq Part) |
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1.
Zooming into Cellular and Molecular Heterogeneity of Pulmonary Hypertension: What More Single-cell Omics Can Offer. 2.
Autosomal Clonal Monoallelic Expression: Natural or Artifactual?. 3.
Stem Cell Pluripotency Genes Klf4 and Oct4 Regulate Complex SMC Phenotypic Changes Critical in Late-Stage Atherosclerotic Lesion Pathogenesis. 4.
Pan-cancer single-cell RNA-seq identifies recurring programs of cellular heterogeneity. 5.
Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin. 6.
CHANGE-seq reveals genetic and epigenetic effects on CRISPR-Cas9 genome-wide activity. 7.
Decoding myofibroblast origins in human kidney fibrosis. 8.
A map of cis-regulatory elements and 3D genome structures in zebrafish. 9.
Single nuclei RNA-seq of mouse placental labyrinth development. 10.
Data Sanitization to Reduce Private Information Leakage from Functional Genomics. 11.
Defining the Teratoma as a Model for Multi-lineage Human Development. 12.
Single-Cell Transcriptional Archetypes of Airway Inflammation in Cystic Fibrosis. 13.
Age-determined expression of priming protease TMPRSS2 and localization of SARS-CoV-2 in lung epithelium. 14.
A High-Resolution Map of Human Enhancer RNA Loci Characterizes Super-enhancer Activities in Cancer. 15.
The landscape of RNA Pol II binding reveals a stepwise transition during ZGA. 16.
A Highly Scalable Method for Joint Whole-Genome Sequencing and Gene-Expression Profiling of Single Cells. 17.
A single-cell atlas and lineage analysis of the adult Drosophila ovary. 18.
snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis. 19.
Astrocytic phagocytosis is a compensatory mechanism for microglial dysfunction. 20.
Rapid and Scalable Profiling of Nascent RNA with fastGRO. 21.
Guidelines for reporting single-cell RNA-seq experiments. 22.
TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment. 23.
RJunBase: a database of RNA splice junctions in human normal and cancerous tissues. 24.
RNA Polymerase II-Associated Factor 1 Regulates Stem Cell Features of Pancreatic Cancer Cells, Independently of the PAF1 Complex, via Interactions With PHF5A and DDX3. 25.
Subnuclear gene positioning through lamina association affects copper tolerance. 26.
Single-Cell Analysis of Neonatal HSC Ontogeny Reveals Gradual and Uncoordinated Transcriptional Reprogramming that Begins before Birth. 27.
Benchmarking of cell type deconvolution pipelines for transcriptomics data. 28.
Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data. 29.
Single nucleus and in situ RNA sequencing reveals cell topographies in the human pancreas. 30.
Ensemble dimensionality reduction and feature gene extraction for single-cell RNA-seq data. 31.
A Genomic Cluster Containing Novel and Conserved Genes is Associated with Cichlid Fish Dental Developmental Convergence. 32.
Truncated stathmin-2 is a marker of TDP-43 pathology in frontotemporal dementia. 33.
Triple RNA-Seq Reveals Synergy in a Human Virus-Fungus Co-infection Model. 34.
PINA 3.0: mining cancer interactome. 35.
Opposing functions of Fng1 and the Rpd3 HDAC complex in H4 acetylation in Fusarium graminearum. 36.
PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments. 37.
Phenotypic variation of transcriptomic cell types in mouse motor cortex. 38.
Gbx2 Identifies Two Amacrine Cell Subtypes with Distinct Molecular, Morphological, and Physiological Properties. 39.
Developmental excitation-inhibition imbalance underlying psychoses revealed by single-cell analyses of discordant twins-derived cerebral organoids. 40.
Molecular estimation of neurodegeneration pseudotime in older brains. 41.
X chromosome dosage of histone demethylase KDM5C determines sex differences in adiposity. 42.
Jointly defining cell types from multiple single-cell datasets using LIGER. 43.
HIV-1 infection activates endogenous retroviral promoters regulating antiviral gene expression. 44.
RUNX1 and CBFβ-SMMHC transactivate target genes together in abnormal myeloid progenitors for leukemia development. 45.
Single cell RNA-seq reveals developmental plasticity with coexisting oncogenic and immune evasion programs in ETP-ALL. 46.
GRNdb: decoding the gene regulatory networks in diverse human and mouse conditions. 47.
Rare genetic variation at transcription factor binding sites modulates local DNA methylation profiles. 48.
Optimized design of antisense oligomers for targeted rRNA depletion. 49.
Comprehensive mapping of the human cytokine gene regulatory network. 50.
Neutrophils interact with cholangiocytes to cause cholestatic changes in alcoholic hepatitis. 51.
Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics. 52.
Development of specialized sensory neurons engages a nuclear receptor required for functional plasticity. 53.
Functional compensation precedes recovery of tissue mass following acute liver injury. 54.
Functional Atlas of Primary miRNA Maturation by the Microprocessor. 55.
Plasmablasts derive from CD23-negative activated B cells after the extinction of IL-4/STAT6 signaling and IRF4 induction. 56.
Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes. 57.
SCRINSHOT enables spatial mapping of cell states in tissue sections with single-cell resolution. 58.
Deep sequencing reveals a DAP1 regulatory haplotype that potentiates autoimmunity in systemic lupus erythematosus. 59.
Imbalance of Regulatory and Cytotoxic SARS-CoV-2-Reactive CD4(+) T Cells in COVID-19. 60.
Identification of bona fide B2 SINE retrotransposon transcription through single-nucleus RNA-seq of the mouse hippocampus. 61.
Generation of onco-enhancer enhances chromosomal remodeling and accelerates tumorigenesis. 62.
Decitabine induces gene derepression on monosomic chromosomes: in vitro and in vivo effects in adverse-risk cytogenetics AML. 63.
LegumeIP V3: from models to crops-an integrative gene discovery platform for translational genomics in legumes. 64.
Altered intestinal ACE2 levels are associated with inflammation, severe disease and response to anti-cytokine therapy in IBD. 65.
UTX maintains functional integrity of murine hematopoietic system by globally regulating aging-associated genes. 66.
Circulating miRNA Spaceflight Signature Reveals Targets for Countermeasure Development. 67.
GTRD: an integrated view of transcription regulation. 68.
Cardiac Pressure Overload Decreases ETV1 Expression in the Left Atrium, Contributing to Atrial Electrical and Structural Remodeling. 69.
Enhanced efficacy of simultaneous PD-1 and PD-L1 immune checkpoint blockade in high grade serous ovarian cancer. 70.
mTORC1 activation in lung mesenchyme drives sex- and age-dependent pulmonary structure and function decline. 71.
Direct RNA sequencing reveals m(6)A modifications on adenovirus RNA are necessary for efficient splicing. 72.
Extracellular traps released by antimicrobial TH17 cells contribute to host defense. 73.
PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies. 74.
Metabolic RNA labeling for probing RNA dynamics in bacteria. 75.
Prrx1 Fibroblasts Represent a Pro-fibrotic Lineage in the Mouse Ventral Dermis. 76.
Prolonged Exposure to Microgravity Reduces Cardiac Contractility and Initiates Remodeling in Drosophila. 77.
The Ig heavy chain protein but not its message controls early B cell development. 78.
Liver Immune Profiling Reveals Pathogenesis and Therapeutics for Biliary Atresia. 79.
NAIL: an evolutionarily conserved lncRNA essential for licensing coordinated activation of p38 and NFκB in colitis. 80.
Recessive, Deleterious Variants in SMG8 Expand the Role of Nonsense-Mediated Decay in Developmental Disorders in Humans. 81.
STRAP regulates alternative splicing fidelity during lineage commitment of mouse embryonic stem cells. 82.
Author Correction: Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas. |
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