Software & Data Analysis

ExDEGA is an analysis tool that maximizes user's convenience so that researchers can more easily handle Excel-based RNA-Seq or Microarray data. ExDEGA analysis tools will continue to be updated to make it easier for researchers who are not accustomed to using Excel to continue to reflect the needs of users. Note that the ExDEGA analysis tool is only available for RNA-seq and Microarray data (Excel file) provided by EBIOGEN

• Gene Category Analysis and Customized gene set analysis
• Gene Ontology & Pathway gene grouping
• Sample comparison and significant data analysis
• GO graph and genes filtering for Significant genes
• Significant chart of sample comparison for filtered genes
• Scatter plot and gene marking
• Volcano Plot and gene marking
• Venn Diagram analysis and corresponding area genes filtering
• KEGG Mapper-Search&Color Pathway Support
• MeV Clustering Heatmap Support
• DAVID Functional Annotation Support
• Selected gene expression pattern graphs
• Powerful Gene Search

If you want to have an experience of ExDEGA tool, please download ExDEGA tool and mRNA-Seq Sample Data below and then install ExDEGA first and just open the sample data in excel form.
This analysis tool is provided free of charge with the data analysis results for our customer. If you want to convert your data into ExDEGA form, please contact us by email service@e-biogen.com.

ExDEGA Software	User Manual	Sample Data		Trouble shooting Manual
Download	Download	Download		Download

• OS Windows 10 or higher / Mac OS "Paralles Desktop"
• CPU dual-core or higher, RAM 8GB or higher (16GB or higher recommended)
• Available for MS Office Excel 2010 or higher / MS Office 365 Excel

ExDEGA GraphicPlus is an ExDEGA support program that makes it easy to create a variety of graphics not directly available within the ExDEGA analysis tool.
Typically, Gene set energy graph, clustering heatmap, and PCA plot can be easily made and used as presentation materials and thesis drawings.
Customers who have received an ExDEGA report can download this program for free.
* After Updating ExDEGA version(the latest version; 4.0.0), ExDEGA GraphicPlus is embedded in ExDEGA Program. If you updated ExDEGA program to the higher than 4.0.0, you can directly use ExDEGA GraphicPlus without installation.

• Function 1. DAVID Graphic

: Graphic visualization of DAVID analysis results(Enriched GO / Pathways / Biological Functions)

• Function 2. Clustering Heatmap

: Hierarchical clustering heatmap of ExDEGA filtered data

• Function 3. PCA Plot 2D/3D

: PCA 2D or 3D plot of ExDEGA data

To experience ExDEGA GraphicPlus, Please update your ExDEGA program version higher than the 4.0.0, Then open ExDEGA report to execute the button named "ExDEGA Graphic Plus Start" on the right lower.

ExDEGA Graphic Plus Software
Download

How to install ExDEGA GraphicPlus

Download ExDEGA GraphicPlus.zip and then Copy & Paste ExDEGAGraphicPlus.exe file from the unzipped folder to the C Drive
like the image below.

• OS Windows 7 or higher / Mac OS "Paralles Desktop"
• CPU dual-core or higher, RAM 4G or higher (8G or higher recommended)
• Requirement of ExDEGA Excel file

ExSCEA(Excel based Single Cell Expression Analysis) is an Excel-based analysis tool that makes it easier and more intuitive for researchers to handle single cell RNA-seq data. You can use ExSCEA to get useful information from the analysis results of single cell RNA-seq. ExSCEA will continue to reflect users' needs and be updated to make it easier for researchers who are not familiar with Excel.

• HVG (Highly Variable Genes), Cell Type, Gene Ontology analysis
• Significant data analysis for Cluster
• Volcano Plot and gene marking/li>
• Venn Diagram analysis and corresponding area genes filtering
• ExDEGA GraphicPlus linkage and application
• KEGG Mapper-Search&Color Pathway Support
• MeV Clustering Heatmap Support
• DAVID Functional Annotation Support
• Selected gene expression pattern graphs

If you want to experience ExSCEA and Loupe of 10x Genomics, download the program installation file and Sample Data below. After installing the program, just open the file of Sample Data.

ExSCEA	User Manual	Sample Data
Download	Download	Download

Loupe	User Manual	Sample Data
Download	Download	Download

• OS Windows 7 or higher / Mac OS "Paralles Desktop"
• CPU dual-core or higher, RAM 4G or higher (8G or higher recommended)
• Available for MS Office Excel 2010 or higher / MS Office 365 Excel

WinSeurat is a program in Single cell RNA-seq analysis that allows researchers to perform more sophisticated analyses by entering the analysis criteria they want, in addition to the basic conditions. WinSurat has been created by modifying an R package program called Seurat, even though researchers who are unfamiliar with the Linux environment can easily perform Single cell RNA-seq analysis in a Windows environment, and new features will be updated to reflect the needs of researchers. WinSeurat requires ExSCEA data (excel files) from Ebiogen.

• Running programs in a Windows OS environment
• Perform analysis by integrating single or multiple samples
• Single cell data quality control and Cell filtering
• Customized UMAP/TSNE Clustering (PCA, Resolution)
• Significant marker gene identification for cluster
• Visualization of each gene expression level for cluster
• Cluster's marker gene and cell type assignment
• Comparison group analysis for cluster or condition
• Volcano plot visualization of differential expression data
• Choose whether to proceed with regression based on cell cycle pattern
• Perform automatic cell type identification analysis based on database
• Visualize expression patterns of genes of interest using Ridge or Dot plot

If you want to experience WinSeurat program, download WinSeurat Trial zip file below. After extracting zip file and installing WinSeurat trial program, use WinSeurat Trial.

WinSeurat	User Manual	WinSeurat Trial
Download	Download	Download

You can download WinSeurat Pro via the link below and purchase it by clicking "Order" to use the product for one year.

WinSeurat Pro	WinSeurat Pro Order
Download

• OS Windows 7 or higher / Mac OS "Paralles Desktop"
• CPU dual-core or higher, RAM 4G or higher (8G or higher recommended)
• Requirement of ExSCEA Excel file input

ExPADA is an analysis tool that maximizes user's convenience so that researchers can more easily handle Excel-based DNA-Seq. ExPADA analysis tools will continue to be updated to make it easier for researchers who are not accustomed to using Excel to continue to reflect the needs of users. Note that the ExPADA analysis tool is only available for DNA-seq data (Excel file) provided by EBIOGEN.

• Gene Ontology Analysis
• Significant data analysis for each Cluster
• Draw Volcano Plot & gene marking
• Analysis using Venn Diagram and get filterd data of those genes
• KEGG Mapper – Search&Color Pathway Support
• MeV Clustering Heatmap Support
• DAVID Functional Annotation Support
• Selected gene expression pattern graphs

If you want to experience ExPADA, please download the program installation file and Sample Data below. After installing the program, just open the Sample Data file.

ExPADA	User Manual	Sample Data
Download	Download	Download

• OS Windows 7 or higher / Mac OS "Paralles Desktop"
• CPU dual-core or higher, RAM 4G or higher (8G or higher recommended)
• Available for MS Office Excel 2010 or higher / MS Office 365 Excel

EXMEGA(Excel-based MEta Genome Analysis) is excel add-on data analysis tool for metagenome analysis that reflects user convenience as much as possible so that researchers can handle metagenome data more easily and intuitively based on Excel. Major functions are assembly result, taxonomy bar plot, diversity, sample clustering, HCL clustering heatmap, Krona chart and so forth. For reference, ExMEGA analysis tool is only available for metagenome data (excel file) provided by Ebiogen.

• Taxonomy filtering
• Significant taxon data analysis
• Volcano plot & gene marking
• Venn diagram analysis and gene filtering
• Taxonomy pie chart and bar plot
• Intersample diversity analysis by Beta diversity(PCoA)
• Hierarchical clustering heatmap

If you want to experience ExMEGA, please download the program installation file and Sample Data below. After installing the program, just open the Sample Data file.

ExMEGA	User Manual	Sample Data
Download	Download	Download

• OS Windows 7 or higher / Mac OS "Paralles Desktop"
• CPU dual-core or higher, RAM 4G or higher (8G or higher recommended)
• Available for MS Office Excel 2010 or higher / MS Office 365 Excel

SABIA is an innovative software that quickly and accurately analyzes various types of cell and tissue images obtained from a microscope. It minimizes computational errors and greatly reduces analysis time. SABIA calculates the incubation rate for cell culture, and if you need cell counts or a variety of image analysis, SABIA can be easily addressed.

• Real time automatic calculation of cell culture rate
• Calculation of cell counts and staining sties
• Automated calculation of tissue fibrosis progression rate
• Specific regions of cell and tissue’s area and length calculation
• Color intensity measurement
• Variou application of image anaysis through color difference

You can use SABIA software free for 15 days after download through below link. Or you can purchase this product through PayPal by clicking "Buy Now".
Purchase price: 550 USD / 1 year for 1 user

SABIA Software	User Manual	SABIA Order
Download	Download

• OS Windows 7 or higher
• CPU dual-core or higher, RAM 4G or higher (8G or higher recommended)
• Graphics resolution 1600 x 900 or higher