DatasetGSEAinput_human1_collapsed_to_symbols.GSEAinput_human1.cls.txt
#B_versus_A.GSEAinput_human1.cls.txt
#B_versus_A_repos
PhenotypeGSEAinput_human1.cls.txt#B_versus_A_repos
Upregulated in classA
GeneSetGO_REGULATION_OF_CD4_POSITIVE_ALPHA_BETA_T_CELL_DIFFERENTIATION
Enrichment Score (ES)-0.5963868
Normalized Enrichment Score (NES)-2.04833
Nominal p-value0.0
FDR q-value0.03441992
FWER p-Value0.074
Table: GSEA Results Summary



Fig 1: Enrichment plot: GO_REGULATION_OF_CD4_POSITIVE_ALPHA_BETA_T_CELL_DIFFERENTIATION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1BCL6BCL6 transcription repressor [Source:HGNC Symbol;Acc:HGNC:1001]BCL6
Entrez,  Source
BCL6 transcription repressor [Source:HGNC Symbol;Acc:HGNC:1001]3841.3250.0095No
2JAK3Janus kinase 3 [Source:HGNC Symbol;Acc:HGNC:6193]JAK3
Entrez,  Source
Janus kinase 3 [Source:HGNC Symbol;Acc:HGNC:6193]15040.696-0.0584No
3PRKCZprotein kinase C zeta [Source:HGNC Symbol;Acc:HGNC:9412]PRKCZ
Entrez,  Source
protein kinase C zeta [Source:HGNC Symbol;Acc:HGNC:9412]18020.616-0.0634No
4HLXH2.0 like homeobox [Source:HGNC Symbol;Acc:HGNC:4978]HLX
Entrez,  Source
H2.0 like homeobox [Source:HGNC Symbol;Acc:HGNC:4978]18410.604-0.0482No
5RC3H1ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]RC3H1
Entrez,  Source
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]24290.477-0.0805No
6TBX21T-box transcription factor 21 [Source:HGNC Symbol;Acc:HGNC:11599]TBX21
Entrez,  Source
T-box transcription factor 21 [Source:HGNC Symbol;Acc:HGNC:11599]31570.339-0.1280No
7RARAretinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]RARA
Entrez,  Source
retinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]36470.261-0.1590No
8IRF4interferon regulatory factor 4 [Source:HGNC Symbol;Acc:HGNC:6119]IRF4
Entrez,  Source
interferon regulatory factor 4 [Source:HGNC Symbol;Acc:HGNC:6119]38340.234-0.1667No
9TNFSF4TNF superfamily member 4 [Source:HGNC Symbol;Acc:HGNC:11934]TNFSF4
Entrez,  Source
TNF superfamily member 4 [Source:HGNC Symbol;Acc:HGNC:11934]46550.122-0.2281No
10ZBTB7Bzinc finger and BTB domain containing 7B [Source:HGNC Symbol;Acc:HGNC:18668]ZBTB7B
Entrez,  Source
zinc finger and BTB domain containing 7B [Source:HGNC Symbol;Acc:HGNC:18668]52610.050-0.2747No
11IL4Rinterleukin 4 receptor [Source:HGNC Symbol;Acc:HGNC:6015]IL4R
Entrez,  Source
interleukin 4 receptor [Source:HGNC Symbol;Acc:HGNC:6015]7718-0.200-0.4637No
12SASH3SAM and SH3 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:15975]SASH3
Entrez,  Source
SAM and SH3 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:15975]7746-0.203-0.4597No
13LOXL3lysyl oxidase like 3 [Source:HGNC Symbol;Acc:HGNC:13869]LOXL3
Entrez,  Source
lysyl oxidase like 3 [Source:HGNC Symbol;Acc:HGNC:13869]8029-0.239-0.4749No
14GATA3GATA binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4172]GATA3
Entrez,  Source
GATA binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4172]8488-0.301-0.5023No
15FOXP3forkhead box P3 [Source:HGNC Symbol;Acc:HGNC:6106]FOXP3
Entrez,  Source
forkhead box P3 [Source:HGNC Symbol;Acc:HGNC:6106]8747-0.336-0.5126No
16NCKAP1LNCK associated protein 1 like [Source:HGNC Symbol;Acc:HGNC:4862]NCKAP1L
Entrez,  Source
NCK associated protein 1 like [Source:HGNC Symbol;Acc:HGNC:4862]9393-0.430-0.5508No
17RC3H2ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]RC3H2
Entrez,  Source
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]9635-0.471-0.5558No
18HMGB1high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]HMGB1
Entrez,  Source
high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]9826-0.498-0.5559No
19SOCS5suppressor of cytokine signaling 5 [Source:HGNC Symbol;Acc:HGNC:16852]SOCS5
Entrez,  Source
suppressor of cytokine signaling 5 [Source:HGNC Symbol;Acc:HGNC:16852]10018-0.528-0.5551No
20CBFBcore-binding factor subunit beta [Source:HGNC Symbol;Acc:HGNC:1539]CBFB
Entrez,  Source
core-binding factor subunit beta [Source:HGNC Symbol;Acc:HGNC:1539]10326-0.578-0.5621No
21IL18interleukin 18 [Source:HGNC Symbol;Acc:HGNC:5986]IL18
Entrez,  Source
interleukin 18 [Source:HGNC Symbol;Acc:HGNC:5986]10363-0.584-0.5473No
22IL27interleukin 27 [Source:HGNC Symbol;Acc:HGNC:19157]IL27
Entrez,  Source
interleukin 27 [Source:HGNC Symbol;Acc:HGNC:19157]10982-0.724-0.5745Yes
23IL23Ainterleukin 23 subunit alpha [Source:HGNC Symbol;Acc:HGNC:15488]IL23A
Entrez,  Source
interleukin 23 subunit alpha [Source:HGNC Symbol;Acc:HGNC:15488]11016-0.732-0.5551Yes
24RUNX1RUNX family transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:10471]RUNX1
Entrez,  Source
RUNX family transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:10471]11105-0.755-0.5393Yes
25SH3RF1SH3 domain containing ring finger 1 [Source:HGNC Symbol;Acc:HGNC:17650]SH3RF1
Entrez,  Source
SH3 domain containing ring finger 1 [Source:HGNC Symbol;Acc:HGNC:17650]11268-0.798-0.5281Yes
26NFKBIDNFKB inhibitor delta [Source:HGNC Symbol;Acc:HGNC:15671]NFKBID
Entrez,  Source
NFKB inhibitor delta [Source:HGNC Symbol;Acc:HGNC:15671]11518-0.884-0.5212Yes
27MALT1MALT1 paracaspase [Source:HGNC Symbol;Acc:HGNC:6819]MALT1
Entrez,  Source
MALT1 paracaspase [Source:HGNC Symbol;Acc:HGNC:6819]11818-1.013-0.5144Yes
28IL12RB1interleukin 12 receptor subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:5971]IL12RB1
Entrez,  Source
interleukin 12 receptor subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:5971]11862-1.034-0.4866Yes
29SOCS1suppressor of cytokine signaling 1 [Source:HGNC Symbol;Acc:HGNC:19383]SOCS1
Entrez,  Source
suppressor of cytokine signaling 1 [Source:HGNC Symbol;Acc:HGNC:19383]11885-1.048-0.4568Yes
30LGALS9galectin 9 [Source:HGNC Symbol;Acc:HGNC:6570]LGALS9
Entrez,  Source
galectin 9 [Source:HGNC Symbol;Acc:HGNC:6570]11910-1.063-0.4266Yes
31RUNX3RUNX family transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:10473]RUNX3
Entrez,  Source
RUNX family transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:10473]12025-1.137-0.4014Yes
32SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]SMAD7
Entrez,  Source
SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]12088-1.177-0.3708Yes
33CD86CD86 molecule [Source:HGNC Symbol;Acc:HGNC:1705]CD86
Entrez,  Source
CD86 molecule [Source:HGNC Symbol;Acc:HGNC:1705]12204-1.264-0.3418Yes
34ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]ANXA1
Entrez,  Source
annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]12244-1.300-0.3057Yes
35IFNGinterferon gamma [Source:HGNC Symbol;Acc:HGNC:5438]IFNG
Entrez,  Source
interferon gamma [Source:HGNC Symbol;Acc:HGNC:5438]12392-1.473-0.2729Yes
36CD83CD83 molecule [Source:HGNC Symbol;Acc:HGNC:1703]CD83
Entrez,  Source
CD83 molecule [Source:HGNC Symbol;Acc:HGNC:1703]12405-1.490-0.2289Yes
37ZC3H12Azinc finger CCCH-type containing 12A [Source:HGNC Symbol;Acc:HGNC:26259]ZC3H12A
Entrez,  Source
zinc finger CCCH-type containing 12A [Source:HGNC Symbol;Acc:HGNC:26259]12464-1.601-0.1853Yes
38NLRP3NLR family pyrin domain containing 3 [Source:HGNC Symbol;Acc:HGNC:16400]NLRP3
Entrez,  Source
NLR family pyrin domain containing 3 [Source:HGNC Symbol;Acc:HGNC:16400]12530-1.787-0.1365Yes
39RIPK2receptor interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:10020]RIPK2
Entrez,  Source
receptor interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:10020]12580-2.149-0.0756Yes
40NFKBIZNFKB inhibitor zeta [Source:HGNC Symbol;Acc:HGNC:29805]NFKBIZ
Entrez,  Source
NFKB inhibitor zeta [Source:HGNC Symbol;Acc:HGNC:29805]12605-2.6330.0019Yes
Table: GSEA details [plain text format]



Fig 2: GO_REGULATION_OF_CD4_POSITIVE_ALPHA_BETA_T_CELL_DIFFERENTIATION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GO_REGULATION_OF_CD4_POSITIVE_ALPHA_BETA_T_CELL_DIFFERENTIATION: Random ES distribution   
Gene set null distribution of ES for GO_REGULATION_OF_CD4_POSITIVE_ALPHA_BETA_T_CELL_DIFFERENTIATION