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제목 (2018-6)RNA-Seq & Microarray 논문 및 바이오뉴스
작성자 ebiogen
작성일자 2018-06-01
조회수 572
  2018년 6월
  Newsletter
www.e-biogen.com #이달의 제품/서비스 행사#
안녕하세요? (주)이바이오젠의 RNA-Seq & Microarray 뉴스레터입니다.
(최근 유명저널에 발표된 논문정보와 바이오뉴스 제공)

올해 6월은 국가적으로 중요한 이벤트가 많은 달입니다. 좋은 결과로 평화로운 세상이 한발더 다가서길 바랍니다.^^

(주)이바이오젠 올림. (Tel. 02-3141-0791, service@e-biogen.com)
ArrayStar's ncRNA Microarray 서비스 할인행사!
QuantSeq 3'mRNA-Seq 서비스 "9+1" 이벤트 안내!
SABIA(세포/조직 이미지 분석 소프트웨어) 가격인하!(평생사용 49만원)
최신 논문 (RNA-Seq & Microarray 분야)

1. Androgen receptor polyglutamine expansion drives age-dependent quality control defects and muscle dysfunction.
Nath SR, Yu Z, Gipson TA, Marsh GB, Yoshidome E, Robins DM, Todi SV, Housman DE, Lieberman AP. J Clin Invest. 2018 May 29. pii: 99042. doi: 10.1172/JCI99042.

2. Tracing the temporal-spatial transcriptome landscapes of the human fetal digestive tract using single-cell RNA-sequencing.
Gao S, Yan L, Wang R, Li J, Yong J, Zhou X, Wei Y, Wu X, Wang X, Fan X, Yan J, Zhi X, Gao Y, Guo H, Jin X, Wang W, Mao Y, Wang F, Wen L, Fu W, Ge H, Qiao J, Tang F. Nat Cell Biol. 2018 Jun;20(6):721-734. doi: 10.1038/s41556-018-0105-4. Epub 2018 May 25.

3. Nardilysin inhibits pancreatitis and suppresses pancreatic ductal adenocarcinoma initiation in mice.
Ikuta K, Fukuda A, Ogawa S, Masuo K, Goto N, Hiramatsu Y, Tsuda M, Kimura Y, Matsumoto Y, Kimura Y, Maruno T, Kanda K, Nishi K, Takaori K, Uemoto S, Takaishi S, Chiba T, Nishi E, Seno H. Gut. 2018 May 24. pii: gutjnl-2017-315425. doi: 10.1136/gutjnl-2017-315425.

4. Regulation of Pathogenic T Helper 17 Cell Differentiation by Steroid Receptor Coactivator-3.
Tanaka K, Martinez GJ, Yan X, Long W, Ichiyama K, Chi X, Kim BS, Reynolds JM, Chung Y, Tanaka S, Liao L, Nakanishi Y, Yoshimura A, Zheng P, Wang X, Tian Q, Xu J, O'Malley BW, Dong C. Cell Rep. 2018 May 22;23(8):2318-2329. doi: 10.1016/j.celrep.2018.04.088.

5. Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing.
Kim JH, Dilthey AT, Nagaraja R, Lee HS, Koren S, Dudekula D, Wood Iii WH, Piao Y, Ogurtsov AY, Utani K, Noskov VN, Shabalina SA, Schlessinger D, Phillippy AM, Larionov V. Nucleic Acids Res. 2018 May 21. doi: 10.1093/nar/gky442.

6. PUF60-activated exons uncover altered 3' splice-site selection by germline missense mutations in a single RRM.
Kralovicova J, ?evcikova I, Stejskalova E, Obuca M, Hiller M, Stanek D, Vorechovsky I. Nucleic Acids Res. 2018 May 18. doi: 10.1093/nar/gky389.

7. Cooperative binding of ApiAP2 transcription factors is crucial for the expression of virulence genes in Toxoplasma gondii.
Lesage KM, Huot L, Mouveaux T, Courjol F, Saliou JM, Gissot M. Nucleic Acids Res. 2018 May 21. doi: 10.1093/nar/gky373.

8. Abnormal Small Intestinal Epithelial Microvilli in Patients With Crohn's Disease.
VanDussen KL, Stojmirovi? A, Li K, Liu TC, Kimes PK, Muegge BD, Simpson KF, Ciorba MA, Perrigoue JG, Friedman JR, Towne JE, Head RD, Stappenbeck TS. Gastroenterology. 2018 May 18. pii: S0016-5085(18)34561-X. doi: 10.1053/j.gastro.2018.05.028.

9. Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes.
Lomberk G, Blum Y, Nicolle R, Nair A, Gaonkar KS, Marisa L, Mathison A, Sun Z, Yan H, Elarouci N, Armenoult L, Ayadi M, Ordog T, Lee JH, Oliver G, Klee E, Moutardier V, Gayet O, Bian B, Duconseil P, Gilabert M, Bigonnet M, Garcia S, Turrini O, Delpero JR, Giovannini M, Grandval P, Gasmi M, Secq V, De Reynies A, Dusetti N, Iovanna J, Urrutia R. Nat Commun. 2018 May 17;9(1):1978. doi: 10.1038/s41467-018-04383-6.

10. Expression of the DNA-Binding Factor TOX Promotes the Encephalitogenic Potential of Microbe-Induced Autoreactive CD8+ T Cells.
Page N, Klimek B, De Roo M, Steinbach K, Soldati H, Lemeille S, Wagner I, Kreutzfeldt M, Di Liberto G, Vincenti I, Lingner T, Salinas G, Bruck W, Simons M, Murr R, Kaye J, Zehn D, Pinschewer DD, Merkler D. Immunity. 2018 May 15;48(5):937-950.e8. doi: 10.1016/j.immuni.2018.04.005.

11. Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations.
Nguyen Q, Lukowski S, Chiu H, Senabouth A, Bruxner T, Christ A, Palpant N, Powell J. Genome Res. 2018 May 11. pii: gr.223925.117. doi: 10.1101/gr.223925.117.

12. TGF-β induces miR-100 and miR-125b but blocks let-7a through LIN28B controlling PDAC progression.
Ottaviani S, Stebbing J, Frampton AE, Zagorac S, Krell J, de Giorgio A, Trabulo SM, Nguyen VTM, Magnani L, Feng H, Giovannetti E, Funel N, Gress TM, Jiao LR, Lombardo Y, Lemoine NR, Heeschen C, Castellano L. Nat Commun. 2018 May 10;9(1):1845. doi: 10.1038/s41467-018-03962-x.

13. miRNA-590-3p promotes ovarian cancer growth and metastasis via a novel FOXA2-versican pathway.
Salem M, O'Brien JA, Bernaudo S, Shawer H, Ye G, Brki? J, Amleh A, Vanderhyden BC, Refky B, Yang BB, Krylov SN, Peng C. Cancer Res. 2018 May 10. pii: canres.3014.2017. doi: 10.1158/0008-5472.CAN-17-3014.

14. Differential activity of transcribed enhancers in the prefrontal cortex of 537 cases with schizophrenia and controls.
Hauberg ME, Fullard JF, Zhu L, Cohain AT, Giambartolomei C, Misir R, Reach S, Johnson JS, Wang M, Mattheisen M, Børglum AD, Zhang B, Sieberts SK, Peters MA, Domenici E, Schadt EE, Devlin B, Sklar P, Roeder K, Roussos P; CommonMind Consortium. Mol Psychiatry. 2018 May 8. doi: 10.1038/s41380-018-0059-8.

15. Identifying novel strategies for treating human hair loss disorders: Cyclosporine A suppresses the Wnt inhibitor, SFRP1, in the dermal papilla of human scalp hair follicles.
Hawkshaw NJ, Hardman JA, Haslam IS, Shahmalak A, Gilhar A, Lim X, Paus R. PLoS Biol. 2018 May 8;16(5):e2003705. doi: 10.1371/journal.pbio.2003705. eCollection 2018 May.

16. Determining the genetic basis of anthracycline-cardiotoxicity by response QTL mapping in induced cardiomyocytes.
Knowles DA, Burrows CK, Blischak JD, Patterson KM, Serie DJ, Norton N, Ober C, Pritchard JK, Gilad Y. Elife. 2018 May 8;7. pii: e33480. doi: 10.7554/eLife.33480.

17. Activation of intestinal tuft cell-expressed Sucnr1 triggers type 2 immunity in the mouse small intestine.
Lei W, Ren W, Ohmoto M, Urban JF Jr, Matsumoto I, Margolskee RF, Jiang P. Proc Natl Acad Sci U S A. 2018 May 22;115(21):5552-5557. doi: 10.1073/pnas.1720758115. Epub 2018 May 7.

18. Allele-specific control of replication timing and genome organization during development.
Rivera-Mulia JC, Dimond A, Vera D, Trevilla-Garcia C, Sasaki T, Zimmerman J, Dupont C, Gribnau J, Fraser P, Gilbert DM. Genome Res. 2018 May 7. doi: 10.1101/gr.232561.117.

19. Loss of MED12 induces tumor dormancy in human epithelial ovarian cancer via downregulation of EGFR.
Luo XL, Deng C, Su XD, Wang F, Chen Z, Wu XP, Liang SB, Liu J, Fu L. Cancer Res. 2018 May 7. pii: canres.0134.2018. doi: 10.1158/0008-5472.CAN-18-0134.

20. SPAR: small RNA-seq portal for analysis of sequencing experiments.
Kuksa PP, Amlie-Wolf A, Katanic ?, Valladares O, Wang LS, Leung YY. Nucleic Acids Res. 2018 May 4. doi: 10.1093/nar/gky330.

21. An integrative model for alternative polyadenylation, IntMAP, delineates mTOR-modulated endoplasmic reticulum stress response.
Chang JW, Zhang W, Yeh HS, Park M, Yao C, Shi Y, Kuang R, Yong J. Nucleic Acids Res. 2018 May 4. doi: 10.1093/nar/gky340.

22. Efficient Generation of CA3 Neurons from Human Pluripotent Stem Cells Enables Modeling of Hippocampal Connectivity In Vitro.
Sarkar A, Mei A, Paquola ACM, Stern S, Bardy C, Klug JR, Kim S, Neshat N, Kim HJ, Ku M, Shokhirev MN, Adamowicz DH, Marchetto MC, Jappelli R, Erwin JA, Padmanabhan K, Shtrahman M, Jin X, Gage FH. Cell Stem Cell. 2018 May 3;22(5):684-697.e9. doi: 10.1016/j.stem.2018.04.009.

23. Single-Cell Transcriptomics and Fate Mapping of Ependymal Cells Reveals an Absence of Neural Stem Cell Function.
Shah PT, Stratton JA, Stykel MG, Abbasi S, Sharma S, Mayr KA, Koblinger K, Whelan PJ, Biernaskie J. Cell. 2018 May 3;173(4):1045-1057.e9. doi: 10.1016/j.cell.2018.03.063.

24. Transcriptome-wide Interrogation of the Functional Intronome by Spliceosome Profiling.
Chen W, Moore J, Ozadam H, Shulha HP, Rhind N, Weng Z, Moore MJ. Cell. 2018 May 3;173(4):1031-1044.e13. doi: 10.1016/j.cell.2018.03.062.

25. Global DNA methylation synergistically regulates the nuclear and mitochondrial genomes in glioblastoma cells.
Sun X, Johnson J, St John JC. Nucleic Acids Res. 2018 May 2. doi: 10.1093/nar/gky339.

26. let-7 MicroRNA-Mediated Regulation of Shh Signaling and the Gene Regulatory Network Is Essential for Retina Regeneration.
Kaur S, Gupta S, Chaudhary M, Khursheed MA, Mitra S, Kurup AJ, Ramachandran R. Cell Rep. 2018 May 1;23(5):1409-1423. doi: 10.1016/j.celrep.2018.04.002.

27. The fractured landscape of RNA-seq alignment: the default in our STARs.
Ballouz S, Dobin A, Gingeras TR, Gillis J. Nucleic Acids Res. 2018 May 1. doi: 10.1093/nar/gky325.

28. The arginine methyltransferase CARM1 represses p300?ACT?CREMτ activity and is required for spermiogenesis.
Bao J, Rousseaux S, Shen J, Lin K, Lu Y, Bedford MT. Nucleic Acids Res. 2018 May 18;46(9):4327-4343. doi: 10.1093/nar/gky240.

29. SEASTAR: systematic evaluation of alternative transcription start sites in RNA.
Qin Z, Stoilov P, Zhang X, Xing Y. Nucleic Acids Res. 2018 May 4;46(8):e45. doi: 10.1093/nar/gky053.

30. Hierarchical interactions between Fnr orthologs allows fine-tuning of transcription in response to oxygen in Herbaspirillum seropedicae.
Batista MB, Chandra G, Monteiro RA, de Souza EM, Dixon R. Nucleic Acids Res. 2018 May 4;46(8):3953-3966. doi: 10.1093/nar/gky142.

31. A regulatory RNA is involved in RNA duplex formation and biofilm regulation in Sulfolobus acidocaldarius.
Orell A, Tripp V, Aliaga-Tobar V, Albers SV, Maracaja-Coutinho V, Randau L. Nucleic Acids Res. 2018 May 18;46(9):4794-4806. doi: 10.1093/nar/gky144.

32. CXCL1-CXCR2 axis mediates angiotensin II-induced cardiac hypertrophy and remodelling through regulation of monocyte infiltration.
Wang L, Zhang YL, Lin QY, Liu Y, Guan XM, Ma XL, Cao HJ, Liu Y, Bai J, Xia YL, Du J, Li HH. Eur Heart J. 2018 May 21;39(20):1818-1831. doi: 10.1093/eurheartj/ehy085.

33. Improving the value of public RNA-seq expression data by phenotype prediction.
Ellis SE, Collado-Torres L, Jaffe A, Leek JT. Nucleic Acids Res. 2018 May 18;46(9):e54. doi: 10.1093/nar/gky102.

34. Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data.
Kim T, Seo HD, Hennighausen L, Lee D, Kang K. Nucleic Acids Res. 2018 May 18;46(9):e53. doi: 10.1093/nar/gky083.

35. RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments.
Zambelli F, Mastropasqua F, Picardi E, D'Erchia AM, Pesole G, Pavesi G. Nucleic Acids Res. 2018 May 4;46(8):e46. doi: 10.1093/nar/gky055.

최신 바이오 뉴스
1. 日 후생노동성, 심장 질환에 유도만능줄기세포 치료 세계 최초 승인
2. '세한도' 속 나무가 추위를 견디는 비결, DNA 구조 조절에 있었네
3. 조로증 치료 길, 드디어 열리나
4. 설사병 잘 걸리는 혈액형 따로 있다
5. 생명 진화 비밀은 접히고 펴지는 단백질의 특수 구조
6. 분해 안 되는 펩타이드 약물 개발
7. 광합성하고 대사 활동하는 인공 세포 만들어냈다
8. 고산증 걸리는 이유 실마리 찾았다
9. '인공망막' 제조 앞당긴다...색-밝기 구분하는 '빛 감지 소재' 개발
10. 별세포 활성 떨어지면 운동 능력은 향상
11. 날씬한 체질? 유전자가 정해
12. 의학실험때 세포 성별 무시하면 ‘큰 코’… 남녀간 약 효과-부작용 달라
13. 사춘기 영양 부실하면 키 안 크는 이유, 성 호르몬 때문?
14. 식물은 이렇게 늙는다...노화 속도 조절 메커니즘 발견
15. 미생물이 스스로 나노 재료 만들어낸다
16. 금연하면 살찌는 이유, 과학적으로 입증했다
17. 국내 연구팀, 집단지성으로 ‘뇌 지도’ 발판 만들었다
18. 현대인 두뇌의 절반 크기 ‘초기인류 뇌’ 미스터리 풀다
19. 브로콜리 성분, 알츠하이머 치료할 길 열어
20. 창의력 비결은 잠...수면 중 기억-창의력 관계 모델 제시
21. 와인 성분이 심장병 치료 돕는다...정맥주사만으로 심장에 약물 전달
22. 영아 아토피 피부염, 원인은 장내미생물 불균형
23. 유럽 훈족-中 흉노족, 유전적으로 한뿌리
24. 인간의 호흡법은 바다 화산의 극한 미생물에서 유래했다?
25. 희귀질환 '신경내분비종양' 검사, 건강보험 급여 전환
26. 불치 면역질환 루프스 병 발병 원인 찾았다
27. ‘치매 단백질’ 연결고리 최초 확인
28. 나무는 어떻게 상처 없이 잎만 정확히 떨어뜨릴까?
29. 英 연구진, 바이러스 감염에 맞서는 새로운 면역세포 발견
30. 면역세포 미토콘드리아 기능 이상의 당뇨병 유발 규명
31. 유명여배우 떨게한 ‘BRCA1’ 유전자 막는 신약?... 유방암 임상서 효과 입증
- 위 기사는 동아사이언스(http://www.dongascience.com/)에서 제공하고 링크클릭시 해당 사이트로 이동하여 기사내용을 보실수 있습니다.
(주)이바이오젠
#주요 서비스#
문의: 02-3141-0791
service@e-biogen.com








(주)이바이오젠, 서울 영등포구 선유로 13길 25, 에이스하이테크시티2, 305호
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