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제목 (2018-5)RNA-Seq & Microarray 논문 및 바이오뉴스
작성자 ebiogen
작성일자 2018-05-01
조회수 386
  2018년 5월
  Newsletter
www.e-biogen.com #이달의 제품/서비스 행사#
안녕하세요? (주)이바이오젠의 RNA-Seq & Microarray 뉴스레터입니다.
(최근 유명저널에 발표된 논문정보와 바이오뉴스 제공)

휴일도 많고 행사도 많은 5월입니다. 기분좋은 일이 지속될 수 있도록 일과 건강을 꼼꼼하게 잘 챙기시길 바랍니다. ^^

(주)이바이오젠 올림. (Tel. 02-3141-0791, service@e-biogen.com)
ArrayStar's ncRNA Microarray 서비스 할인행사!
QuantSeq 3'mRNA-Seq 서비스 "9+1" 이벤트 안내!
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최신 논문 (RNA-Seq & Microarray 분야)

1. Suppression of TGFβ-mediated conversion of endothelial cells and fibroblasts into cancer associated (myo)fibroblasts via HDAC inhibition.
Kim DJ, Dunleavey JM, Xiao L, Ollila DW, Troester MA, Otey CA, Li W, Barker TH, Dudley AC. Br J Cancer. 2018 Apr 26. doi: 10.1038/s41416-018-0072-3.

2. Single-Cell RNA-Seq Reveals Transcriptional Heterogeneity in Latent and Reactivated HIV-Infected Cells.
Golumbeanu M, Cristinelli S, Rato S, Munoz M, Cavassini M, Beerenwinkel N, Ciuffi A. Cell Rep. 2018 Apr 24;23(4):942-950. doi: 10.1016/j.celrep.2018.03.102.

3. A serum microRNA signature predicts trastuzumab benefit in HER2-positive metastatic breast cancer patients.
Li H, Liu J, Chen J, Wang H, Yang L, Chen F, Fan S, Wang J, Shao B, Yin D, Zeng M, Li M, Li J, Su F, Liu Q, Yao H, Su S, Song E. Nat Commun. 2018 Apr 24;9(1):1614. doi: 10.1038/s41467-018-03537-w.

4. Using structurally defined oligosaccharides to understand the interactions between proteins and heparan sulfate.
Xu D, Arnold K, Liu J. Curr Opin Struct Biol. 2018 Apr 20;50:155-161. doi: 10.1016/j.sbi.2018.04.003.

5. Different Neuronal Activity Patterns Induce Different Gene Expression Programs.
Tyssowski KM, DeStefino NR, Cho JH, Dunn CJ, Poston RG, Carty CE, Jones RD, Chang SM, Romeo P, Wurzelmann MK, Ward JM, Andermann ML, Saha RN, Dudek SM, Gray JM. Neuron. 2018 Apr 17. pii: S0896-6273(18)30285-X. doi: 10.1016/j.neuron.2018.04.001.

6. CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5' Capping with NAD.
Vvedenskaya IO, Bird JG, Zhang Y, Zhang Y, Jiao X, Barvik I, Krasny L, Kiledjian M, Taylor DM, Ebright RH, Nickels BE. Mol Cell. 2018 Apr 18. pii: S1097-2765(18)30217-X. doi: 10.1016/j.molcel.2018.03.014.

7. Dissociable Structural and Functional Hippocampal Outputs via Distinct Subiculum Cell Classes.
Cembrowski MS, Phillips MG, DiLisio SF, Shields BC, Winnubst J, Chandrashekar J, Bas E, Spruston N. Cell. 2018 Apr 10. pii: S0092-8674(18)30311-8. doi: 10.1016/j.cell.2018.03.031.

8. Polysialic acid is a cellular receptor for human adenovirus 52.
Lenman A, Liaci AM, Liu Y, Frangsmyr L, Frank M, Blaum BS, Chai W, Podgorski II, Harrach B, Benk? M, Feizi T, Stehle T, Arnberg N. Proc Natl Acad Sci U S A. 2018 Apr 19. pii: 201716900. doi: 10.1073/pnas.1716900115.

9. Silencing of long non-coding RNA MIR22HG triggers cell survival/death signaling via oncogenes YBX1, MET, and p21 in lung cancer.
Su W, Feng S, Chen X, Yang X, Mao R, Guo C, Wang Z, Thomas DG, Lin J, Reddy RM, Orringer MB, Chang AC, Yang Z, Beer DG, Chen G. Cancer Res. 2018 Apr 18. pii: canres.0222.2018. doi: 10.1158/0008-5472.CAN-18-0222.

10. PARN and TOE1 Constitute a 3' End Maturation Module for Nuclear Non-coding RNAs.
Son A, Park JE, Kim VN. Cell Rep. 2018 Apr 17;23(3):888-898. doi: 10.1016/j.celrep.2018.03.089.

11. Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm.
Ding H, Douglass EF Jr., Sonabend AM, Mela A, Bose S, Gonzalez C, Canoll PD, Sims PA, Alvarez MJ, Califano A. Nat Commun. 2018 Apr 16;9(1):1471. doi: 10.1038/s41467-018-03843-3.

12. Differential effects of estrogen receptor beta isoforms on glioblastoma progression.
Liu J, Sareddy GR, Zhou M, Viswanadhapalli S, Li X, Lai Z, Tekmal RR, Brenner AJ, Vadlamudi RK. Cancer Res. 2018 Apr 16. pii: canres.3470.2017. doi: 10.1158/0008-5472.CAN-17-3470.

13. Using single-cell genomics to understand developmental processes and cell fate decisions.
Griffiths JA, Scialdone A, Marioni JC. Mol Syst Biol. 2018 Apr 16;14(4):e8046. doi: 10.15252/msb.20178046.

14. The arginine methyltransferase CARM1 represses p300?ACT?CREMτ activity and is required for spermiogenesis.
Bao J, Rousseaux S, Shen J, Lin K, Lu Y, Bedford MT. Nucleic Acids Res. 2018 Apr 5. doi: 10.1093/nar/gky240.

15. Active host response to algal symbionts in the sea slug Elysia chlorotica.
Chan CX, Vaysberg P, Price DC, Pelletreau KN, Rumpho ME, Bhattacharya D. Mol Biol Evol. 2018 Apr 5. doi: 10.1093/molbev/msy061.

16. Gene-level differential analysis at transcript-level resolution.
Yi L, Pimentel H, Bray NL, Pachter L. Genome Biol. 2018 Apr 12;19(1):53. doi: 10.1186/s13059-018-1419-z.

17. SQUID: transcriptomic structural variation detection from RNA-seq.
Ma C, Shao M, Kingsford C. Genome Biol. 2018 Apr 12;19(1):52. doi: 10.1186/s13059-018-1421-5.

18. Chromatin Accessibility-Based Characterization of the Gene Regulatory Network Underlying Plasmodium falciparum Blood-Stage Development.
Toenhake CG, Fraschka SA, Vijayabaskar MS, Westhead DR, van Heeringen SJ, Bartfai R. Cell Host Microbe. 2018 Apr 11;23(4):557-569.e9. doi: 10.1016/j.chom.2018.03.007.

19. Widespread changes in transcriptome profile of human mesenchymal stem cells induced by two-dimensional nanosilicates.
Carrow JK, Cross LM, Reese RW, Jaiswal MK, Gregory CA, Kaunas R, Singh I, Gaharwar AK. Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):E3905-E3913. doi: 10.1073/pnas.1716164115. Epub 2018 Apr 11.

20. Nucleus-specific expression in the multinuclear mushroom-forming fungus Agaricus bisporus reveals different nuclear regulatory programs.
Gehrmann T, Pelkmans JF, Ohm RA, Vos AM, Sonnenberg ASM, Baars JJP, Wosten HAB, Reinders MJT, Abeel T. Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4429-4434. doi: 10.1073/pnas.1721381115. Epub 2018 Apr 11.

21. Global Cancer Transcriptome Quantifies Repeat Element Polarization between Immunotherapy Responsive and T Cell Suppressive Classes.
Solovyov A, Vabret N, Arora KS, Snyder A, Funt SA, Bajorin DF, Rosenberg JE, Bhardwaj N, Ting DT, Greenbaum BD. Cell Rep. 2018 Apr 10;23(2):512-521. doi: 10.1016/j.celrep.2018.03.042.

22. Massive mining of publicly available RNA-seq data from human and mouse.
Lachmann A, Torre D, Keenan AB, Jagodnik KM, Lee HJ, Wang L, Silverstein MC, Ma'ayan A. Nat Commun. 2018 Apr 10;9(1):1366. doi: 10.1038/s41467-018-03751-6.

23. Selenoprotein P Promotes the Development of Pulmonary Arterial Hypertension: A Possible Novel Therapeutic Target.
Kikuchi N, Satoh K, Kurosawa R, Yaoita N, Elias-Al-Mamun M, Siddique MAH, Omura J, Satoh T, Nogi M, Sunamura S, Miyata S, Saito Y, Hoshikawa Y, Okada Y, Shimokawa H. Circulation. 2018 Apr 10. pii: CIRCULATIONAHA.117.033113. doi: 10.1161/CIRCULATIONAHA.117.033113.

24. Correction to: Dual RNA-seq reveals viral infections in asthmatic children without respiratory illness which are associated with changes in the airway transcriptome.
Wesolowska-Andersen A, Everman JL, Davidson R, Rios C, Herrin R, Eng C, Janssen WJ, Liu AH, Oh SS, Kumar R, Fingerlin TE, Rodriguez-Santana J, Burchard EG, Seibold MA. Genome Biol. 2018 Apr 10;19(1):49. doi: 10.1186/s13059-018-1423-3.

25. PARP-1 protects against colorectal tumor induction, but promotes inflammation-driven colorectal tumor progression.
Dorsam B, Seiwert N, Foersch S, Stroh S, Nagel G, Begaliew D, Diehl E, Kraus A, McKeague M, Minneker V, Roukos V, Reißig S, Waisman A, Moehler M, Stier A, Mangerich A, Dantzer F, Kaina B, Fahrer J. Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):E4061-E4070. doi: 10.1073/pnas.1712345115. Epub 2018 Apr 9.

26. FateID infers cell fate bias in multipotent progenitors from single-cell RNA-seq data.
Herman JS, Sagar, Grun D. Nat Methods. 2018 May;15(5):379-386. doi: 10.1038/nmeth.4662. Epub 2018 Apr 9.

27. De novo reconstruction of human adipose transcriptome reveals conserved lncRNAs as regulators of brown adipogenesis.
Ding C, Lim YC, Chia SY, Walet ACE, Xu S, Lo KA, Zhao Y, Zhu D, Shan Z, Chen Q, Leow MK, Xu D, Sun L. Nat Commun. 2018 Apr 6;9(1):1329. doi: 10.1038/s41467-018-03754-3.

28. A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development.
Cesana M, Guo MH, Cacchiarelli D, Wahlster L, Barragan J, Doulatov S, Vo LT, Salvatori B, Trapnell C, Clement K, Cahan P, Tsanov KM, Sousa PM, Tazon-Vega B, Bolondi A, Giorgi FM, Califano A, Rinn JL, Meissner A, Hirschhorn JN, Daley GQ. Cell Stem Cell. 2018 Apr 5;22(4):575-588.e7. doi: 10.1016/j.stem.2018.03.012.

29. A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples.
Chen H, Li C, Peng X, Zhou Z, Weinstein JN; Cancer Genome Atlas Research Network, Liang H. Cell. 2018 Apr 5;173(2):386-399.e12. doi: 10.1016/j.cell.2018.03.027.

30. In Inflamed Intestinal Tissues and Epithelial Cells, Interleukin 22 Signaling Increases Expression of H19 Long Noncoding RNA, Which Promotes Mucosal Regeneration.
Geng H, Bu HF, Liu F, Wu L, Pfeifer K, Chou PM, Wang X, Sun J, Lu L, Pandey A, Bartolomei MS, De Plaen IG, Wang P, Yu J, Qian J, Tan XD. Gastroenterology. 2018 Apr 2. pii: S0016-5085(18)30367-6. doi: 10.1053/j.gastro.2018.03.058.

31. FAM210A is a novel determinant of bone and muscle structure and strength.
Tanaka KI, Xue Y, Nguyen-Yamamoto L, Morris JA, Kanazawa I, Sugimoto T, Wing SS, Richards JB, Goltzman D. Proc Natl Acad Sci U S A. 2018 Apr 17;115(16):E3759-E3768. doi: 10.1073/pnas.1719089115. Epub 2018 Apr 4.

32. Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas.
Way GP, Sanchez-Vega F, La K, Armenia J, Chatila WK, Luna A, Sander C, Cherniack AD, Mina M, Ciriello G, Schultz N; Cancer Genome Atlas Research Network, Sanchez Y, Greene CS. Cell Rep. 2018 Apr 3;23(1):172-180.e3. doi: 10.1016/j.celrep.2018.03.046.

33. Impaired Spermatogenesis, Muscle, and Erythrocyte Function in U12 Intron Splicing-Defective Zrsr1 Mutant Mice.
Horiuchi K, Perez-Cerezales S, Papasaikas P, Ramos-Ibeas P, Lopez-Cardona AP, Laguna-Barraza R, Fonseca Balvis N, Pericuesta E, Fernandez-Gonzalez R, Planells B, Viera A, Suja JA, Ross PJ, Alen F, Orio L, Rodriguez de Fonseca F, Pintado B, Valcarcel J, Gutierrez-Adan A. Cell Rep. 2018 Apr 3;23(1):143-155. doi: 10.1016/j.celrep.2018.03.028.

34. PTCD1 Is Required for 16S rRNA Maturation Complex Stability and Mitochondrial Ribosome Assembly.
Perks KL, Rossetti G, Kuznetsova I, Hughes LA, Ermer JA, Ferreira N, Busch JD, Rudler DL, Spahr H, Schondorf T, Shearwood AJ, Viola HM, Siira SJ, Hool LC, Milenkovic D, Larsson NG, Rackham O, Filipovska A. Cell Rep. 2018 Apr 3;23(1):127-142. doi: 10.1016/j.celrep.2018.03.033.

35. The enigma of monosomy 7.
Inaba T, Honda H, Matsui H. Blood. 2018 Apr 3. pii: blood-2017-12-822262. doi: 10.1182/blood-2017-12-822262.

36. scmap: projection of single-cell RNA-seq data across data sets.
Kiselev VY, Yiu A, Hemberg M. Nat Methods. 2018 May;15(5):359-362. doi: 10.1038/nmeth.4644. Epub 2018 Apr 2.

37. Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Butler A, Hoffman P, Smibert P, Papalexi E, Satija R. Nat Biotechnol. 2018 Apr 2. doi: 10.1038/nbt.4096.

38. Characterization of clinically used oral antiseptics as quadruplex-binding ligands.
Calabrese DR, Zlotkowski K, Alden S, Hewitt WM, Connelly CM, Wilson RM, Gaikwad S, Chen L, Guha R, Thomas CJ, Mock BA, Schneekloth JS Jr. Nucleic Acids Res. 2018 Apr 6;46(6):2722-2732. doi: 10.1093/nar/gky084.

39. Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP.
Kim D, Seo SW, Gao Y, Nam H, Guzman GI, Cho BK, Palsson BO. Nucleic Acids Res. 2018 Apr 6;46(6):2901-2917. doi: 10.1093/nar/gky069.

40. Investigation of the Relationship Between Radiation Dose and Gene Mutations and Fusions in Post-Chernobyl Thyroid Cancer.
Efanov AA, Brenner AV, Bogdanova TI, Kelly LM, Liu P, Little MP, Wald AI, Hatch M, Zurnadzy LY, Nikiforova MN, Drozdovitch V, Leeman-Neill R, Mabuchi K, Tronko MD, Chanock SJ, Nikiforov YE. J Natl Cancer Inst. 2018 Apr 1;110(4):371-378. doi: 10.1093/jnci/djx209.

41. Role of RBP2-Induced ER and IGF1R-ErbB Signaling in Tamoxifen Resistance in Breast Cancer.
Choi HJ, Joo HS, Won HY, Min KW, Kim HY, Son T, Oh YH, Lee JY, Kong G. J Natl Cancer Inst. 2018 Apr 1;110(4). doi: 10.1093/jnci/djx207.

42. Mapping autosomal recessive intellectual disability: combined microarray and exome sequencing identifies 26 novel candidate genes in 192 consanguineous families.
Harripaul R, Vasli N, Mikhailov A, Rafiq MA, Mittal K, Windpassinger C, Sheikh TI, Noor A, Mahmood H, Downey S, Johnson M, Vleuten K, Bell L, Ilyas M, Khan FS, Khan V, Moradi M, Ayaz M, Naeem F, Heidari A, Ahmed I, Ghadami S, Agha Z, Zeinali S, Qamar R, Mozhdehipanah H, John P, Mir A, Ansar M, French L, Ayub M, Vincent JB. Mol Psychiatry. 2018 Apr;23(4):973-984. doi: 10.1038/mp.2017.60. Epub 2017 Apr 11.

최신 바이오 뉴스
1. 유전자 가위로 바이러스 찾아낸다
2. DNA서 염기 하나만 바꿔… 근위축증 앓는 생쥐 고쳤다
3. 세포 내 단백질, 원하는 대로 골라 염색하는 법 개발
4. “DNA구조, ‘이중나선’만 있는 것 아니다”
5. 유산균으로 미세먼지 악영향 막는다
6. 적혈구를 ‘필터’로...고성능 혈당측정기 개발
7. 우울증 일으키는 유전자 있다...44개 연관 유전자 구역 확인
9. 정확도 1만 배! 합성 물질로 성능 개선한 유전자가위 ‘크리스퍼’
10. 암 진행 단계 확인 ‘지수’ 나왔다
11. 몸이 ‘핫(HOT)’해지면, 입맛이 달아난다!
12. ‘바다의 유목민’ 바자우 족이 숨 오래 참는 비밀
13. 저지방&저열량 식단이 ‘젊은 뇌’ 만든다
14. 암 증식, 신경 발달까지 선명하게 보여주는 광학현미경
15. 간암 완치 가능해질까…간암환자 92.6%서 나타난 핵심 유전자 발견
16. 알츠하이머 치료 효과 가진 새 효소 찾았다
17. 사람 장 속에만?...식물에도 마이크로바이옴 있다
18. 슈퍼박테리아 잡을 ‘오리너구리 모유’
19. 두 약물 같이 쓸 때 효과-부작용 예측… ‘AI 약사’ 온다
20. KAIST, 암 치료 효과 높인 레이저 치료 기술 개발
21. 잔류농약, 바이러스로 확인
22. 늙고 병든 심장을 젊고 건강하게? 시계 되돌릴 유전자 찾았다
23. 비만-아토피-암 치료 돕는 한국인 장 속 ‘착한 미생물’ 찾는다
24. 남성 경구 피임약, 상용화 한 발짝 더
25. ‘바이오 굴기’ 中, 느슨한 규제 속 ‘크리스퍼 유전자 가위’ 임상시험 독식?
26. 독성물질 보톨리눔, 염기서열 분석 의무화 해야
- 위 기사는 동아사이언스(http://www.dongascience.com/)에서 제공하고 링크클릭시 해당 사이트로 이동하여 기사내용을 보실수 있습니다.
(주)이바이오젠
#주요 서비스#
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