Home > 고객지원 > Monthly Letter


문의하시기전에 게시판에서 한번 확인후 연락주시면 성심 성의껏 답변해드리겠습니다.

제목 (2018-2)RNA-Seq & Microarray 논문 및 바이오뉴스
작성자 ebiogen
작성일자 2018-02-01
조회수 66
  2018년 2월
  Newsletter
www.e-biogen.com #이달의 제품/서비스 행사#
안녕하세요? (주)이바이오젠의 RNA-Seq & Microarray 뉴스레터입니다.
(최근 유명저널에 발표된 논문정보와 바이오뉴스 제공)

매서운 추위가 지속되고 있습니다. 추위가 누그러지길 바라며
감기 조심, 불 조심, 빙판길 조심하세요!^^


(주)이바이오젠 올림. (Tel. 02-3141-0791, service@e-biogen.com)
샘플당 5만원, RNA-Seq & Microarray
데이터분석 할인행사!

TF-NLCA, 전사인자 활성 스크리닝
서비스 런칭 할인행사!

ExDEGA 업데이트(v.1.6.0) 공지 및
샘플데이터
최신 논문 (RNA-Seq & Microarray 분야)

1. High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.
Shinozaki Y, Nicolas P, Fernandez-Pozo N, Ma Q, Evanich DJ, Shi Y, Xu Y, Zheng Y, Snyder SI, Martin LBB, Ruiz-May E, Thannhauser TW, Chen K, Domozych DS, Catala C, Fei Z, Mueller LA, Giovannoni JJ, Rose JKC. Nat Commun. 2018 Jan 25;9(1):364. doi: 10.1038/s41467-017-02782-9.

2. C9ORF72 repeat expansion causes vulnerability of motor neurons to Ca2+-permeable AMPA receptor-mediated excitotoxicity.
Selvaraj BT, Livesey MR, Zhao C, Gregory JM, James OT, Cleary EM, Chouhan AK, Gane AB, Perkins EM, Dando O, Lillico SG, Lee YB, Nishimura AL, Poreci U, Thankamony S, Pray M, Vasistha NA, Magnani D, Borooah S, Burr K, Story D, McCampbell A, Shaw CE, Kind PC, Aitman TJ, Whitelaw CBA, Wilmut I, Smith C, Miles GB, Hardingham GE, Wyllie DJA, Chandran S. Nat Commun. 2018 Jan 24;9(1):347. doi: 10.1038/s41467-017-02729-0.

3. Mutations in THAP1/DYT6 reveal that diverse dystonia genes disrupt similar neuronal pathways and functions.
Zakirova Z, Fanutza T, Bonet J, Readhead B, Zhang W, Yi Z, Beauvais G, Zwaka TP, Ozelius LJ, Blitzer RD, Gonzalez-Alegre P, Ehrlich ME. PLoS Genet. 2018 Jan 24;14(1):e1007169. doi: 10.1371/journal.pgen.1007169.

4. Tumor-stroma IL-1β-IRAK4 feedforward circuitry drives tumor fibrosis, chemoresistance, and poor prognosis in pancreatic cancer.
Zhang D, Li L, Jiang H, Li Q, Wang-Gillam A, Yu J, Head R, Liu J, Ruzinova MB, Lim KH. Cancer Res. 2018 Jan 23. pii: canres.1366.2017. doi: 10.1158/0008-5472.CAN-17-1366.

5. Big Strides in Cellular MicroRNA Expression.
Halushka MK, Fromm B, Peterson KJ, McCall MN. Trends Genet. 2018 Jan 17. pii: S0168-9525(17)30235-4. doi: 10.1016/j.tig.2017.12.015.

6. Diff-seq: A high throughput sequencing-based mismatch detection assay for DNA variant enrichment and discovery.
Aggeli D, Karas VO, Sinnott-Armstrong NA, Varghese V, Shafer RW, Greenleaf WJ, Sherlock G. Nucleic Acids Res. 2018 Jan 19. doi: 10.1093/nar/gky022.

7. Highly selective retrieval of accurate DNA utilizing a pool of in situ-replicated DNA from multiple next-generation sequencing platforms.
Lim H, Cho N, Ahn J, Park S, Jang H, Kim H, Han H, Lee JH, Bang D. Nucleic Acids Res. 2018 Jan 18. doi: 10.1093/nar/gky016.

8. FoxP2 isoforms delineate spatiotemporal transcriptional networks for vocal learning in the zebra finch.
Burkett ZD, Day NF, Kimball TH, Aamodt CM, Heston JB, Hilliard AT, Xiao X, White SA. Elife. 2018 Jan 23;7. pii: e30649. doi: 10.7554/eLife.30649.

9. Bacterial RNA Biology on a Genome Scale.
Hor J, Gorski SA, Vogel J. Mol Cell. 2018 Jan 16. pii: S1097-2765(17)30980-2. doi: 10.1016/j.molcel.2017.12.023.

10. Genetic variants in pachyonychia congenita-associated keratins increase susceptibility to tooth decay.
Duverger O, Carlson JC, Karacz CM, Schwartz ME, Cross MA, Marazita ML, Shaffer JR, Morasso MI. PLoS Genet. 2018 Jan 22;14(1):e1007168. doi: 10.1371/journal.pgen.1007168.

11. TimeLapse-seq: adding a temporal dimension to RNA sequencing through nucleoside recoding.
Schofield JA, Duffy EE, Kiefer L, Sullivan MC, Simon MD. Nat Methods. 2018 Jan 22. doi: 10.1038/nmeth.4582.

12. A general and flexible method for signal extraction from single-cell RNA-seq data.
Risso D, Perraudeau F, Gribkova S, Dudoit S, Vert JP. Nat Commun. 2018 Jan 18;9(1):284. doi: 10.1038/s41467-017-02554-5.

13. Complement Receptor C5aR1 Plays an Evolutionarily Conserved Role in Successful Cardiac Regeneration.
Natarajan N, Abbas Y, Bryant DM, Gonzalez-Rosa JM, Sharpe M, Uygur A, Cocco-Delgado LH, Ho NN, Gerard NP, Gerard CJ, Macrae CA, Burns CE, Burns CG, Whited JL, Lee RT. Circulation. 2018 Jan 18. pii: CIRCULATIONAHA.117.030801. doi: 10.1161/CIRCULATIONAHA.117.030801.

14. Diverse Brain Myeloid Expression Profiles Reveal Distinct Microglial Activation States and Aspects of Alzheimer's Disease Not Evident in Mouse Models.
Friedman BA, Srinivasan K, Ayalon G, Meilandt WJ, Lin H, Huntley MA, Cao Y, Lee SH, Haddick PCG, Ngu H, Modrusan Z, Larson JL, Kaminker JS, van der Brug MP, Hansen DV. Cell Rep. 2018 Jan 16;22(3):832-847. doi: 10.1016/j.celrep.2017.12.066.

15. Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart.
Skelly DA, Squiers GT, McLellan MA, Bolisetty MT, Robson P, Rosenthal NA, Pinto AR. Cell Rep. 2018 Jan 16;22(3):600-610. doi: 10.1016/j.celrep.2017.12.072.

16. E6 protein expressed by high-risk HPV activates super-enhancers of the EGFR and c-MET oncogenes by destabilizing the histone demethylase KDM5C.
Chen X, Loo JX, Shi X, Xiong W, Guo Y, Ke H, Yang M, Jiang Y, Xia S, Zhao M, Zhong S, He C, Fu L, Li F. Cancer Res. 2018 Jan 16. pii: canres.2118.2017. doi: 10.1158/0008-5472.CAN-17-2118.

17. Runs of homozygosity: windows into population history and trait architecture.
Ceballos FC, Joshi PK, Clark DW, Ramsay M, Wilson JF. Nat Rev Genet. 2018 Jan 15. doi: 10.1038/nrg.2017.109.

18. Highly parallel direct RNA sequencing on an array of nanopores.
Garalde DR, Snell EA, Jachimowicz D, Sipos B, Lloyd JH, Bruce M, Pantic N, Admassu T, James P, Warland A, Jordan M, Ciccone J, Serra S, Keenan J, Martin S, McNeill L, Wallace EJ, Jayasinghe L, Wright C, Blasco J, Young S, Brocklebank D, Juul S, Clarke J, Heron AJ, Turner DJ. Nat Methods. 2018 Jan 15. doi: 10.1038/nmeth.4577.

19. Reconstructing differentiation networks and their regulation from time series single cell expression data.
Ding J, Aronow B, Kaminski N, Kitzmiller J, Whitsett J, Bar-Joseph Z. Genome Res. 2018 Jan 9. pii: gr.225979.117. doi: 10.1101/gr.225979.117.

20. Replication Study: Transcriptional amplification in tumor cells with elevated c-Myc.
Lewis LM, Edwards MC, Meyers ZR, Talbot CC, Hao H, Blum D; Reproducibility Project: Cancer Biology, Iorns E, Tsui R, Denis A, Perfito N, Errington TM. Elife. 2018 Jan 9;7. pii: e30274. doi: 10.7554/eLife.30274.

21. PfCDPK1 is critical for malaria parasite gametogenesis and mosquito infection.
Bansal A, Molina-Cruz A, Brzostowski J, Liu P, Luo Y, Gunalan K, Li Y, Ribeiro JMC, Miller LH. Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):774-779. doi: 10.1073/pnas.1715443115. Epub 2018 Jan 8.

22. Long noncoding RNA pancEts-1 promotes neuroblastoma progression through hnRNPK-mediated β-catenin stabilization.
Li D, Wang X, Mei H, Fang E, Ye L, Song H, Yang F, Li H, Huang K, Zheng L, Tong Q. Cancer Res. 2018 Jan 8. pii: canres.2295.2017. doi: 10.1158/0008-5472.CAN-17-2295.

23. The regulon of the RNA chaperone CspA and its auto-regulation in Staphylococcus aureus.
Caballero CJ, Menendez-Gil P, Catalan-Moreno A, Vergara-Irigaray M, Garcia B, Segura V, Irurzun N, Villanueva M, Ruiz de Los Mozos I, Solano C, Lasa I, Toledo-Arana A. Nucleic Acids Res. 2018 Jan 4. doi: 10.1093/nar/gkx1284.

24. Androgen receptor splice variants bind to constitutively open chromatin and promote abiraterone-resistant growth of prostate cancer.
He Y, Lu J, Ye Z, Hao S, Wang L, Kohli M, Tindall DJ, Li B, Zhu R, Wang L, Huang H. Nucleic Acids Res. 2018 Jan 4. doi: 10.1093/nar/gkx1306.

25. A Comprehensive Workflow for Read Depth-Based Identification of Copy-Number Variation from Whole-Genome Sequence Data.
Trost B, Walker S, Wang Z, Thiruvahindrapuram B, MacDonald JR, Sung WWL, Pereira SL, Whitney J, Chan AJS, Pellecchia G, Reuter MS, Lok S, Yuen RKC, Marshall CR, Merico D, Scherer SW. Am J Hum Genet. 2018 Jan 4;102(1):142-155. doi: 10.1016/j.ajhg.2017.12.007.

26. The Aging Astrocyte Transcriptome from Multiple Regions of the Mouse Brain.
Boisvert MM, Erikson GA, Shokhirev MN, Allen NJ. Cell Rep. 2018 Jan 2;22(1):269-285. doi: 10.1016/j.celrep.2017.12.039.

27. Cooperative interactions between seed-borne bacterial and air-borne fungal pathogens on rice.
Jung B, Park J, Kim N, Li T, Kim S, Bartley LE, Kim J, Kim I, Kang Y, Yun K, Choi Y, Lee HH, Ji S, Lee KS, Kim BY, Shon JC, Kim WC, Liu KH, Yoon D, Kim S, Seo YS, Lee J. Nat Commun. 2018 Jan 2;9(1):31. doi: 10.1038/s41467-017-02430-2.

28. Veratramine modulates AP-1-dependent gene transcription by directly binding to programmable DNA.
Bai F, Liu K, Li H, Wang J, Zhu J, Hao P, Zhu L, Zhang S, Shan L, Ma W, Bode AM, Zhang W, Li H, Dong Z. Nucleic Acids Res. 2018 Jan 25;46(2):546-557. doi: 10.1093/nar/gkx1241.

29. Identification of diverse target RNAs that are functionally regulated by human Pumilio proteins.
Bohn JA, Van Etten JL, Schagat TL, Bowman BM, McEachin RC, Freddolino PL, Goldstrohm AC. Nucleic Acids Res. 2018 Jan 9;46(1):362-386. doi: 10.1093/nar/gkx1120.

30. ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.
Brozovic M, Dantec C, Dardaillon J, Dauga D, Faure E, Gineste M, Louis A, Naville M, Nitta KR, Piette J, Reeves W, Scornavacca C, Simion P, Vincentelli R, Bellec M, Aicha SB, Fagotto M, Gueroult-Bellone M, Haeussler M, Jacox E, Lowe EK, Mendez M, Roberge A, Stolfi A, Yokomori R, Brown CT, Cambillau C, Christiaen L, Delsuc F, Douzery E, Dumollard R, Kusakabe T, Nakai K, Nishida H, Satou Y, Swalla B, Veeman M, Volff JN, Lemaire P. Nucleic Acids Res. 2018 Jan 4;46(D1):D718-D725. doi: 10.1093/nar/gkx1108.

31. FreePSI: an alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome.
Zhou J, Ma S, Wang D, Zeng J, Jiang T. Nucleic Acids Res. 2018 Jan 25;46(2):e11. doi: 10.1093/nar/gkx1059.

32. Female Mimicry by Sneaker Males Has a Transcriptomic Signature in Both the Brain and the Gonad in a Sex-Changing Fish.
Todd EV, Liu H, Lamm MS, Thomas JT, Rutherford K, Thompson KC, Godwin JR, Gemmell NJ. Mol Biol Evol. 2018 Jan 1;35(1):225-241. doi: 10.1093/molbev/msx293. PMID: 29136184

33. Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.
Kersey PJ, Allen JE, Allot A, Barba M, Boddu S, Bolt BJ, Carvalho-Silva D, Christensen M, Davis P, Grabmueller C, Kumar N, Liu Z, Maurel T, Moore B, McDowall MD, Maheswari U, Naamati G, Newman V, Ong CK, Paulini M, Pedro H, Perry E, Russell M, Sparrow H, Tapanari E, Taylor K, Vullo A, Williams G, Zadissia A, Olson A, Stein J, Wei S, Tello-Ruiz M, Ware D, Luciani A, Potter S, Finn RD, Urban M, Hammond-Kosack KE, Bolser DM, De Silva N, Howe KL, Langridge N, Maslen G, Staines DM, Yates A. Nucleic Acids Res. 2018 Jan 4;46(D1):D802-D808. doi: 10.1093/nar/gkx1011.

34. HCMDB: the human cancer metastasis database.
Zheng G, Ma Y, Zou Y, Yin A, Li W, Dong D. Nucleic Acids Res. 2018 Jan 4;46(D1):D950-D955. doi: 10.1093/nar/gkx1008.

35. FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data.
Leader DP, Krause SA, Pandit A, Davies SA, Dow JAT. Nucleic Acids Res. 2018 Jan 4;46(D1):D809-D815. doi: 10.1093/nar/gkx976.

36. OverGeneDB: a database of 5' end protein coding overlapping genes in human and mouse genomes.
Rosikiewicz W, Suzuki Y, Makalowska I. Nucleic Acids Res. 2018 Jan 4;46(D1):D186-D193. doi: 10.1093/nar/gkx948.

37. PolyA_DB 3 catalogs cleavage and polyadenylation sites identified by deep sequencing in multiple genomes.
Wang R, Nambiar R, Zheng D, Tian B. Nucleic Acids Res. 2018 Jan 4;46(D1):D315-D319. doi: 10.1093/nar/gkx1000.

38. dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease.
Zheng LL, Zhou KR, Liu S, Zhang DY, Wang ZL, Chen ZR, Yang JH, Qu LH. Nucleic Acids Res. 2018 Jan 4;46(D1):D85-D91. doi: 10.1093/nar/gkx972.

39. Xenbase: a genomic, epigenomic and transcriptomic model organism database.
Karimi K, Fortriede JD, Lotay VS, Burns KA, Wang DZ, Fisher ME, Pells TJ, James-Zorn C, Wang Y, Ponferrada VG, Chu S, Chaturvedi P, Zorn AM, Vize PD. Nucleic Acids Res. 2018 Jan 4;46(D1):D861-D868. doi: 10.1093/nar/gkx936.

40. Database Resources of the BIG Data Center in 2018.
BIG Data Center Members . Nucleic Acids Res. 2018 Jan 4;46(D1):D14-D20. doi: 10.1093/nar/gkx897.

41. iSyTE 2.0: a database for expression-based gene discovery in the eye.
Kakrana A, Yang A, Anand D, Djordjevic D, Ramachandruni D, Singh A, Huang H, Ho JWK, Lachke SA. Nucleic Acids Res. 2018 Jan 4;46(D1):D875-D885. doi: 10.1093/nar/gkx837.

42. CSCD: a database for cancer-specific circular RNAs.
Xia S, Feng J, Chen K, Ma Y, Gong J, Cai F, Jin Y, Gao Y, Xia L, Chang H, Wei L, Han L, He C. Nucleic Acids Res. 2018 Jan 4;46(D1):D925-D929. doi: 10.1093/nar/gkx863.

43. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
Prat T, Hajny J, Grunewald W, Vasileva M, Molnar G, Tejos R, Schmid M, Sauer M, Friml J. PLoS Genet. 2018 Jan 29;14(1):e1007177. doi: 10.1371/journal.pgen.1007177.

최신 바이오 뉴스
1. 수술 없이 면역력 높여 주는 정맥주사로 암 치료한다
2. 암 전이 일어나는 첫 단추 알아냈다
3. 유방암 표적치료효과 높였다… 면역저하 없애는 신물질 발견
4. 극저온전자현미경으로 관찰한 RNA 중합 효소의 모습
5. 인류 문명 만든 일등공신, 뇌 크기 아닌 뇌의 ‘모양’
6. 독감 바이러스의 강력한 변신
7. 인플루엔자 항체 있는 사람, 독감 걸려도 전염성 낮았다
8. 중국, 세계 첫 영장류 복제 성공…신약 개발·뇌 연구 앞당길 듯
9. 전기장으로 움직이는 DNA 나노 로봇팔
10. 미세먼지 장기간 흡입하면 고혈압 위험 높아진다
11. 치매 치료제, 침체 딛고 일어나나
12. 짜게 먹는 당신, 뇌 손상에 주의하라!
13. 신경 쇠약증 오래 앓으면 치매로 이어진다?
14. 냄새? 어눌해진 말? ‘속설’로 알았던 증세, 치매 진단법으로 진화
15. 근육 재생 꿈 한발 더...피부 유래 줄기세포로 실제 움직이는 골격근 만들어
16. 유전자가위 크리스퍼, 인공지능과 결합하다!
17. 치매로 이어지는 헌팅턴병 초기 발생과정 밝혔다
18. DNA 대신 치아로 성별 확인
19. 마른 체형인데 심장질환? 다중 유전자 검사로 미리 진단한다
20. 동맥경화 발생과정, 혈관 구조 재현한 '오간온어칩'으로 밝혀
21. 간염→간손상 이어지는 원리 찾았다
22. 체내 깊숙이 숨은 박테리아도 초음파 메아리로 본다
23. 딸을 가졌다고?... 임신 때 해열ㆍ진통제 자제해라
24. 미생물 메아리로 질병의 정확한 위치 찾아낸다
25. 줄기세포로 모낭재현, 완전한 탈모 치료 가능할까?
- 위 기사는 동아사이언스(http://www.dongascience.com/)에서 제공하고 링크클릭시 해당 사이트로 이동하여 기사내용을 보실수 있습니다.
(주)이바이오젠
#주요 서비스#
문의: 02-3141-0791
service@e-biogen.com








(주)이바이오젠, 서울 영등포구 선유로 13길 25, 에이스하이테크시티2, 305호
Tel. 02-3141-0791, Fax. 02-3141-0792, www.e-biogen.com
다운로드수 0