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제목 (2018-1)RNA-Seq & Microarray 논문 및 바이오뉴스
작성자 ebiogen
작성일자 2018-01-02
조회수 777
안녕하세요? (주)이바이오젠의 RNA-Seq & Microarray 뉴스레터입니다.
(최근 유명저널에 발표된 논문정보와 바이오뉴스 제공)

2018년 무술년 새해가 시작되었습니다. 계획하고 실천하고 결실맺는 한해 되시길 함께 응원합니다.^^

(주)이바이오젠 올림. (Tel. 02-3141-0791, service@e-biogen.com)
[이달의 제품/서비스 행사]

빠른 시일내에 알찬 행사, 반가운 이벤트를 준비하여 안내하도록 하겠습니다.

1. Transcriptional Changes during Naturally Acquired Zika Virus Infection Render Dendritic Cells Highly Conducive to Viral Replication.
Sun X, Hua S, Chen HR, Ouyang Z, Einkauf K, Tse S, Ard K, Ciaranello A, Yawetz S, Sax P, Rosenberg ES, Lichterfeld M, Yu XG. Cell Rep. 2017 Dec 19;21(12):3471-3482. doi: 10.1016/j.celrep.2017.11.087.

2. Type I interferon-mediated autoinflammation due to DNase II deficiency.
Rodero MP, Tesser A, Bartok E, Rice GI, Della Mina E, Depp M, Beitz B, Bondet V, Cagnard N, Duffy D, Dussiot M, Fremond ML, Gattorno M, Guillem F, Kitabayashi N, Porcheray F, Rieux-Laucat F, Seabra L, Uggenti C, Volpi S, Zeef LAH, Alyanakian MA, Beltrand J, Bianco AM, Boddaert N, Brouzes C, Candon S, Caorsi R, Charbit M, Fabre M, Faletra F, Girard M, Harroche A, Hartmann E, Lasne D, Marcuzzi A, Neven B, Nitschke P, Pascreau T, Pastore S, Picard C, Picco P, Piscianz E, Polak M, Quartier P, Rabant M, Stocco G, Taddio A, Uettwiller F, Valencic E, Vozzi D, Hartmann G, Barchet W, Hermine O, Bader-Meunier B, Tommasini A, Crow YJ. Nat Commun. 2017 Dec 19;8(1):2176. doi: 10.1038/s41467-017-01932-3.

3. IL-10 Signaling Remodels Adipose Chromatin Architecture to Limit Thermogenesis and Energy Expenditure.
Rajbhandari P, Thomas BJ, Feng AC, Hong C, Wang J, Vergnes L, Sallam T, Wang B, Sandhu J, Seldin MM, Lusis AJ, Fong LG, Katz M, Lee R, Young SG, Reue K, Smale ST, Tontonoz P. Cell. 2017 Dec 8. pii: S0092-8674(17)31366-1. doi: 10.1016/j.cell.2017.11.019.

4. Oncogenic Role of THOR, a Conserved Cancer/Testis Long Non-coding RNA.
Hosono Y, Niknafs YS, Prensner JR, Iyer MK, Dhanasekaran SM, Mehra R, Pitchiaya S, Tien J, Escara-Wilke J, Poliakov A, Chu SC, Saleh S, Sankar K, Su F, Guo S, Qiao Y, Freier SM, Bui HH, Cao X, Malik R, Johnson TM, Beer DG, Feng FY, Zhou W, Chinnaiyan AM. Cell. 2017 Dec 14;171(7):1559-1572.e20. doi: 10.1016/j.cell.2017.11.040.

5. The landscape of human mutually exclusive splicing.
Hatje K, Rahman RU, Vidal RO, Simm D, Hammesfahr B, Bansal V, Rajput A, Mickael ME, Sun T, Bonn S, Kollmar M. Mol Syst Biol. 2017 Dec 14;13(12):959. doi: 10.15252/msb.20177728.

6. Veratramine modulates AP-1-dependent gene transcription by directly binding to programmable DNA.
Bai F, Liu K, Li H, Wang J, Zhu J, Hao P, Zhu L, Zhang S, Shan L, Ma W, Bode AM, Zhang W, Li H, Dong Z. Nucleic Acids Res. 2017 Dec 9. doi: 10.1093/nar/gkx1241.

7. ciRS-7 exonic sequence is embedded in a long non-coding RNA locus.
Barrett SP, Parker KR, Horn C, Mata M, Salzman J. PLoS Genet. 2017 Dec 13;13(12):e1007114. doi: 10.1371/journal.pgen.1007114.

8. An oomycete plant pathogen reprograms host pre-mRNA splicing to subvert immunity.
Huang J, Gu L, Zhang Y, Yan T, Kong G, Kong L, Guo B, Qiu M, Wang Y, Jing M, Xing W, Ye W, Wu Z, Zhang Z, Zheng X, Gijzen M, Wang Y, Dong S. Nat Commun. 2017 Dec 12;8(1):2051. doi: 10.1038/s41467-017-02233-5.

9. Single-cell RNA-seq reveals a subpopulation of prostate cancer cells with enhanced cell cycle-related transcription and attenuated androgen response.
Horning AM, Wang Y, Lin CK, Louie AD, Jadhav RR, Hung CN, Wang CM, Lin CL, Kirma NB, Liss MA, Kumar AP, Sun L, Liu Z, Chao WT, Wang Q, Jin VX, Chen CL, Huang TH. Cancer Res. 2017 Dec 12. pii: canres.1924.2017. doi: 10.1158/0008-5472.CAN-17-1924.

10. Gli1 identifies osteogenic progenitors for bone formation and fracture repair.
Shi Y, He G, Lee WC, McKenzie JA, Silva MJ, Long F. Nat Commun. 2017 Dec 11;8(1):2043. doi: 10.1038/s41467-017-02171-2.

11. Estimation of immune cell content in tumour tissue using single-cell RNA-seq data.
Schelker M, Feau S, Du J, Ranu N, Klipp E, MacBeath G, Schoeberl B, Raue A. Nat Commun. 2017 Dec 11;8(1):2032. doi: 10.1038/s41467-017-02289-3.

12. Annotation-free quantification of RNA splicing using LeafCutter.
Li YI, Knowles DA, Humphrey J, Barbeira AN, Dickinson SP, Im HK, Pritchard JK. Nat Genet. 2017 Dec 11. doi: 10.1038/s41588-017-0004-9.

13. Brain urea increase is an early Huntington's disease pathogenic event observed in a prodromal transgenic sheep model and HD cases.
Handley RR, Reid SJ, Brauning R, Maclean P, Mears ER, Fourie I, Patassini S, Cooper GJS, Rudiger SR, McLaughlan CJ, Verma PJ, Gusella JF, MacDonald ME, Waldvogel HJ, Bawden CS, Faull RLM, Snell RG. Proc Natl Acad Sci U S A. 2017 Dec 11. pii: 201711243. doi: 10.1073/pnas.1711243115.

14. Targeting TMBIM1 Alleviates Pathological Cardiac Hypertrophy.
Deng KQ, Zhao GN, Wang Z, Fang J, Jiang Z, Gong J, Yan FJ, Zhu XY, Zhang P, She ZG, Li H. Circulation. 2017 Dec 11. pii: CIRCULATIONAHA.117.031659. doi: 10.1161/CIRCULATIONAHA.117.031659.

15. Transcription factor activities enhance markers of drug sensitivity in cancer.
Garcia-Alonso LM, Iorio F, Matchan A, Fonseca NA, Jaaks P, Peat G, Pignatelli M, Falcone F, Benes CH, Dunham I, Bignell GR, McDade S, Garnett MJ, Saez-Rodriguez J. Cancer Res. 2017 Dec 11. pii: canres.1679.2017. doi: 10.1158/0008-5472.CAN-17-1679.

16. Spliceosomal protein U1A is involved in alternative splicing and salt stress tolerance in Arabidopsis thaliana.
Gu J, Xia Z, Luo Y, Jiang X, Qian B, Xie H, Zhu JK, Xiong L, Zhu J, Wang ZY. Nucleic Acids Res. 2017 Dec 8. doi: 10.1093/nar/gkx1229.

17. Hypoxia-induced upregulation of BMX kinase mediates therapeutic resistance in acute myeloid leukemia.
van Oosterwijk JG, Buelow DR, Drenberg CD, Vasilyeva A, Li L, Shi L, Wang YD, Finkelstein D, Shurtleff SA, Janke LJ, Pounds S, Rubnitz JE, Inaba H, Pabla N, Baker SD. J Clin Invest. 2017 Dec 11. pii: 91893. doi: 10.1172/JCI91893.

18. Dissecting Cell-Type Composition and Activity-Dependent Transcriptional State in Mammalian Brains by Massively Parallel Single-Nucleus RNA-Seq.
Hu P, Fabyanic E, Kwon DY, Tang S, Zhou Z, Wu H. Mol Cell. 2017 Dec 7;68(5):1006-1015.e7. doi: 10.1016/j.molcel.2017.11.017.

19. SIDR: simultaneous isolation and parallel sequencing of genomic DNA and total RNA from single cells.
Han KY, Kim KT, Joung JG, Son DS, Kim YJ, Jo A, Jeon HJ, Moon HS, Yoo CE, Chung W, Eum HH, Kim S, Kim HK, Lee JE, Ahn MJ, Lee HO, Park D, Park WY. Genome Res. 2017 Dec 5. doi: 10.1101/gr.223263.117.

20. A Balance of Yki/Sd Activator and E2F1/Sd Repressor Complexes Controls Cell Survival and Affects Organ Size.
Zhang P, Pei C, Wang X, Xiang J, Sun BF, Cheng Y, Qi X, Marchetti M, Xu JW, Sun YP, Edgar BA, Yuan Z. Dev Cell. 2017 Dec 4;43(5):603-617.e5. doi: 10.1016/j.devcel.2017.10.033.

21. 3D genome of multiple myeloma reveals spatial genome disorganization associated with copy number variations.
Wu P, Li T, Li R, Jia L, Zhu P, Liu Y, Chen Q, Tang D, Yu Y, Li C. Nat Commun. 2017 Dec 5;8(1):1937. doi: 10.1038/s41467-017-01793-w.

22. Mediator Complex Subunits MED2, MED5, MED16, and MED23 Genetically Interact in the Regulation of Phenylpropanoid Biosynthesis.
Dolan WL, Dilkes BP, Stout JM, Bonawitz ND, Chapple C. Plant Cell. 2017 Dec 4. pii: tpc.00282.2017. doi: 10.1105/tpc.17.00282.

23. LAST, a c-Myc-inducible long noncoding RNA, cooperates with CNBP to promote CCND1 mRNA stability in human cells.
Cao L, Zhang P, Li J, Wu M. Elife. 2017 Dec 4;6. pii: e30433. doi: 10.7554/eLife.30433.

24. Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome.
Tilgner H, Jahanbani F, Gupta I, Collier P, Wei E, Rasmussen M, Snyder MP. Genome Res. 2017 Dec 1. pii: gr.230516.117. doi: 10.1101/gr.230516.117.

25. Linnorm: improved statistical analysis for single cell RNA-seq expression data.
Yip SH, Wang P, Kocher JA, Sham PC, Wang J. Nucleic Acids Res. 2017 Dec 15;45(22):13097. doi: 10.1093/nar/gkx1189.

26. sRNAnalyzer-a flexible and customizable small RNA sequencing data analysis pipeline.
Wu X, Kim TK, Baxter D, Scherler K, Gordon A, Fong O, Etheridge A, Galas DJ, Wang K. Nucleic Acids Res. 2017 Dec 1;45(21):12140-12151. doi: 10.1093/nar/gkx999.

27. Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests.
Vitsios DM, Kentepozidou E, Quintais L, Benito-Gutierrez E, van Dongen S, Davis MP, Enright AJ. Nucleic Acids Res. 2017 Dec 1;45(21):e177. doi: 10.1093/nar/gkx836.

28. Chromatin proteomics reveals novel combinatorial histone modification signatures that mark distinct subpopulations of macrophage enhancers.
Soldi M, Mari T, Nicosia L, Musiani D, Sigismondo G, Cuomo A, Pavesi G, Bonaldi T. Nucleic Acids Res. 2017 Dec 1;45(21):12195-12213. doi: 10.1093/nar/gkx821.

29. Linnorm: improved statistical analysis for single cell RNA-seq expression data.
Yip SH, Wang P, Kocher JA, Sham PC, Wang J. Nucleic Acids Res. 2017 Dec 15;45(22):e179. doi: 10.1093/nar/gkx828.

30. Knockdown of Anillin Actin Binding Protein Blocks Cytokinesis in Hepatocytes and Reduces Liver Tumor Development in Mice without Affecting Regeneration.
Zhang S, Nguyen LH, Zhou K, Tu HC, Sehgal A, Nassour I, Li L, Gopal P, Goodman J, Singal AG, Yopp A, Zhang Y, Siegwart DJ, Zhu H. Gastroenterology. 2017 Dec 20. pii: S0016-5085(17)36717-3. doi: 10.1053/j.gastro.2017.12.013.

31. The nuclear matrix protein HNRNPU maintains 3D genome architecture globally in mouse hepatocytes.
Fan H, Lv P, Huo X, Wu J, Wang Q, Cheng L, Liu Y, Tang Q, Zhang L, Zhang F, Zheng X, Wu H, Wen B. Genome Res. 2017 Dec 22. pii: gr.224576.117. doi: 10.1101/gr.224576.117.

32. Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis.
Franco HL, Nagari A, Malladi V, Li W, Xi Y, Richardson D, Allton KL, Tanaka K, Li J, Murakami S, Keyomarsi K, Bedford MT, Shi X, Li W, Barton MC, Dent SYR, Kraus WL. Genome Res. 2017 Dec 22. pii: gr.226019.117. doi: 10.1101/gr.226019.117.

33. Helicobacter pylori Depletes Cholesterol in Gastric Glands to Prevent Interferon gamma Signaling and Escape the Inflammatory Response.
Morey P, Pfannkuch L, Pang E, Boccellato F, Sigal M, Imai-Matsushima A, Dyer V, Koch M, Mollenkopf HJ, Schlaermann P, Meyer TF. Gastroenterology. 2017 Dec 19. pii: S0016-5085(17)36712-4. doi: 10.1053/j.gastro.2017.12.008.

34. Single-cell RNA-seq study determines the ontogeny of macrophages in glioblastomas.
Zong CC. Genome Biol. 2017 Dec 21;18(1):235. doi: 10.1186/s13059-017-1375-z.

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2. 병든 세포 실시간 추적으로 암 조기 진단한다
3. 귓불에 대각선 주름 있으면 치매 위험 높아
4. 35억년 전 생명 탄생 증거 나왔다!
5. 세균도 촉각이 있다
6. 내 기억력의 품질, 관리하기 나름
7. 지구 생명체 기원의 ‘미싱링크’ 찾았다
8. 당뇨병 없어도 임신초기 혈당수치 높으면 아기심장 위협한다
9. 호모사피엔스, 퇴행은 이미 시작되었나?
10. “오가노이드 활용하면 실험동물 구할 수 있다”
11. 바이오인공장기ㅣ개인맞춤 생체장기, 신의 영역일까?
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14. 북유럽신 토르를 막으면 암도 고칠 수 있다?
15. 암세포 보호막 뚫는 항암 나노물질 개발
16. 이종장기이식 10년 내 상용화 문턱 넘는다
17. 흡연이 대장질환 유발?
18. DNA 나노 구조물로 그린 모나리자 미소
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20. “의사선생님, 제 장기는 새 것으로 교체해 주세요”
21. 플라나리아 무한 재생의 비밀 밝혔다
22. 베이지색 지방이 칼로리 태우는 새 메커니즘 발견
23. 유전자 치료제 해결사 될까
24. 유전자 치료연구 80%가 바이러스 이용
25. 의약품 핵심 물질, 자유자재로 다루는 법 찾아냈다
26. 오메가3 지방산, 몸에 좋은 것만은 아니다
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(주)이바이오젠
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(주)이바이오젠, 서울 영등포구 선유로 13길 25, 에이스하이테크시티2, 305호
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