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제목 (2017-12)RNA-Seq & Microarray 논문 및 바이오뉴스
작성자 ebiogen
작성일자 2017-12-01
조회수 32
안녕하세요? (주)이바이오젠의 RNA-Seq & Microarray 뉴스레터입니다.
(최근 유명저널에 발표된 논문정보와 바이오뉴스 제공)

2017년 정유년 마지막 달입니다. 한해 마무리 잘하시고 차가운 날씨에 건강 주의하세요!^^

(주)이바이오젠 올림. (Tel. 02-3141-0791, service@e-biogen.com)
[이달의 제품/서비스 행사]

NGS(RNA-Seq/miRNA-Seq/ChIP-Seq/
MBD-Seq) 서비스 할인행사!

Antibody Array 실험분석서비스
~20% 할인행사[~12/31]

1. Whole blood stabilization for the microfluidic isolation and molecular characterization of circulating tumor cells.
Wong KHK, Tessier SN, Miyamoto DT, Miller KL, Bookstaver LD, Carey TR, Stannard CJ, Thapar V, Tai EC, Vo KD, Emmons ES, Pleskow HM, Sandlin RD, Sequist LV, Ting DT, Haber DA, Maheswaran S, Stott SL, Toner M. Nat Commun. 2017 Nov 23;8(1):1733. doi: 10.1038/s41467-017-01705-y.

2. FMRFamide-like peptides expand the behavioral repertoire of a densely connected nervous system.
Lee JS, Shih PY, Schaedel ON, Quintero-Cadena P, Rogers AK, Sternberg PW. Proc Natl Acad Sci U S A. 2017 Nov 22. pii: 201710374. doi: 10.1073/pnas.1710374114.

3. Investigation of the Relationship Between Radiation Dose and Gene Mutations and Fusions in Post-Chernobyl Thyroid Cancer.
Efanov AA, Brenner AV, Bogdanova TI, Kelly LM, Liu P, Little MP, Wald AI, Hatch M, Zurnadzy LY, Nikiforova MN, Drozdovitch V, Mabuchi K, Tronko MD, Chanock SJ, Nikiforov YE. J Natl Cancer Inst. 2017 Nov 18. doi: 10.1093/jnci/djx209.

4. Identification of diverse target RNAs that are functionally regulated by human Pumilio proteins.
Bohn JA, Van Etten JL, Schagat TL, Bowman BM, McEachin RC, Freddolino PL, Goldstrohm AC. Nucleic Acids Res. 2017 Nov 20. doi: 10.1093/nar/gkx1120.

5. Linnorm: improved statistical analysis for single cell RNA-seq expression data.
Yip SH, Wang P, Kocher JA, Sham PC, Wang J. Nucleic Acids Res. 2017 Nov 17. doi: 10.1093/nar/gkx1189.

6. NRF2 regulates endothelial glycolysis and proliferation with miR-93 and mediates the effects of oxidized phospholipids on endothelial activation.
Kuosmanen SM, Kansanen E, Kaikkonen MU, Sihvola V, Pulkkinen K, Jyrkkanen HK, Tuoresmaki P, Hartikainen J, Hippelainen M, Kokki H, Tavi P, Heikkinen S, Levonen AL. Nucleic Acids Res. 2017 Nov 17. doi: 10.1093/nar/gkx1155.

7. Immune Activation and Benefit From Avelumab in EBV-Positive Gastric Cancer.
Panda A, Mehnert JM, Hirshfield KM, Riedlinger G, Damare S, Saunders T, Kane M, Sokol L, Stein MN, Poplin E, Rodriguez-Rodriguez L, Silk AW, Aisner J, Chan N, Malhotra J, Frankel M, Kaufman HL, Ali S, Ross JS, White EP, Bhanot G, Ganesan S. J Natl Cancer Inst. 2017 Nov 15. doi: 10.1093/jnci/djx213.

8. Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications.
Stamos JL, Lentzsch AM, Lambowitz AM. Mol Cell. 2017 Nov 9. pii: S1097-2765(17)30799-2. doi: 10.1016/j.molcel.2017.10.024.

9. Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics.
Potts AH, Vakulskas CA, Pannuri A, Yakhnin H, Babitzke P, Romeo T. Nat Commun. 2017 Nov 17;8(1):1596. doi: 10.1038/s41467-017-01613-1.

10. Interferon-γ signaling in melanocytes and melanoma cells regulates expression of CTLA-4.
Mo X, Zhang H, Preston S, Martin K, Zhou B, Vadalia N, Gamero AM, Soboloff J, Tempera I, Zaidi MR. Cancer Res. 2017 Nov 17. pii: canres.1615.2017. doi: 10.1158/0008-5472.CAN-17-1615.

11. Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-Cell RNA Sequencing.
Li H, Horns F, Wu B, Xie Q, Li J, Li T, Luginbuhl DJ, Quake SR, Luo L. Cell. 2017 Nov 16;171(5):1206-1220.e22. doi: 10.1016/j.cell.2017.10.019.

12. ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.
Brozovic M, Dantec C, Dardaillon J, Dauga D, Faure E, Gineste M, Louis A, Naville M, Nitta KR, Piette J, Reeves W, Scornavacca C, Simion P, Vincentelli R, Bellec M, Aicha SB, Fagotto M, Gueroult-Bellone M, Haeussler M, Jacox E, Lowe EK, Mendez M, Roberge A, Stolfi A, Yokomori R, Brown CT, Cambillau C, Christiaen L, Delsuc F, Douzery E, Dumollard R, Kusakabe T, Nakai K, Nishida H, Satou Y, Swalla B, Veeman M, Volff JN, Lemaire P. Nucleic Acids Res. 2017 Nov 15. doi: 10.1093/nar/gkx1108.

13. Alternative transcription start site selection in Mr-OPY2 controls lifestyle transitions in the fungus Metarhizium robertsii.
Guo N, Qian Y, Zhang Q, Chen X, Zeng G, Zhang X, Mi W, Xu C, St Leger RJ, Fang W. Nat Commun. 2017 Nov 16;8(1):1565. doi: 10.1038/s41467-017-01756-1.

14. A high-resolution mRNA expression time course of embryonic development in zebrafish.
White RJ, Collins JE, Sealy IM, Wali N, Dooley CM, Digby Z, Stemple DL, Murphy DN, Billis K, Hourlier T, Fullgrabe A, Davis MP, Enright AJ, Busch-Nentwich EM. Elife. 2017 Nov 16;6. pii: e30860. doi: 10.7554/eLife.30860.

15. In Situ Fixation Redefines Quiescence and Early Activation of Skeletal Muscle Stem Cells.
Machado L, Esteves de Lima J, Fabre O, Proux C, Legendre R, Szegedi A, Varet H, Ingerslev LR, Barres R, Relaix F, Mourikis P. Cell Rep. 2017 Nov 14;21(7):1982-1993. doi: 10.1016/j.celrep.2017.10.080.

16. Coupling shRNA screens with single-cell RNA-seq identifies a dual role for mTOR in reprogramming-induced senescence.
Aarts M, Georgilis A, Beniazza M, Beolchi P, Banito A, Carroll T, Kulisic M, Kaemena DF, Dharmalingam G, Martin N, Reik W, Zuber J, Kaji K, Chandra T, Gil J. Genes Dev. 2017 Oct 15;31(20):2085-2098. doi: 10.1101/gad.297796.117. Epub 2017 Nov 14.

17. Phospholipase D inhibitors reduce human prostate cancer cell proliferation and colony formation.
Noble AR, Maitland NJ, Berney DM, Rumsby MG. Br J Cancer. 2017 Nov 14. doi: 10.1038/bjc.2017.391.

18. FreePSI: an alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome.
Zhou J, Ma S, Wang D, Zeng J, Jiang T. Nucleic Acids Res. 2017 Nov 9. doi: 10.1093/nar/gkx1059.

19. Female mimicry by sneaker males has a transcriptomic signature in both the brain and gonad in a sex changing fish.
Todd EV, Liu H, Lamm MS, Thomas JT, Rutherford K, Thompson KC, Godwin JR, Gemmell NJ. Mol Biol Evol. 2017 Nov 8. doi: 10.1093/molbev/msx293.

20. Repression of miR-31 by BCL6 stabilizes the helper function of human follicular helper T cells.
Ripamonti A, Provasi E, Lorenzo M, De Simone M, Ranzani V, Vangelisti S, Curti S, Bonnal RJP, Pignataro L, Torretta S, Geginat J, Rossetti G, Pagani M, Abrignani S. Proc Natl Acad Sci U S A. 2017 Nov 13. pii: 201705364. doi: 10.1073/pnas.1705364114.

21. Accurate assembly of transcripts through phase-preserving graph decomposition.
Shao M, Kingsford C. Nat Biotechnol. 2017 Nov 13. doi: 10.1038/nbt.4020.

22. Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data.
Racle J, de Jonge K, Baumgaertner P, Speiser DE, Gfeller D. Elife. 2017 Nov 13;6. pii: e26476. doi: 10.7554/eLife.26476.

23. IL-2 imprints human naive B cell fate towards plasma cell through ERK/ELK1-mediated BACH2 repression.
Hipp N, Symington H, Pastoret C, Caron G, Monvoisin C, Tarte K, Fest T, Delaloy C. Nat Commun. 2017 Nov 13;8(1):1443. doi: 10.1038/s41467-017-01475-7.

24. The Stress Granule Transcriptome Reveals Principles of mRNA Accumulation in Stress Granules.
Khong A, Matheny T, Jain S, Mitchell SF, Wheeler JR, Parker R. Mol Cell. 2017 Nov 16;68(4):808-820.e5. doi: 10.1016/j.molcel.2017.10.015. Epub 2017 Nov 9.

25. KSRP specifies monocytic and granulocytic differentiation through regulating miR-129 biogenesis and RUNX1 expression.
Zhao H, Wang X, Yi P, Si Y, Tan P, He J, Yu S, Ren Y, Ma Y, Zhang J, Wang D, Wang F, Yu J. Nat Commun. 2017 Nov 10;8(1):1428. doi: 10.1038/s41467-017-01425-3.

26. The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA.
Hammond SA, Warren RL, Vandervalk BP, Kucuk E, Khan H, Gibb EA, Pandoh P, Kirk H, Zhao Y, Jones M, Mungall AJ, Coope R, Pleasance S, Moore RA, Holt RA, Round JM, Ohora S, Walle BV, Veldhoen N, Helbing CC, Birol I. Nat Commun. 2017 Nov 10;8(1):1433. doi: 10.1038/s41467-017-01316-7.

27. Genetic circuit characterization and debugging using RNA-seq.
Gorochowski TE, Espah Borujeni A, Park Y, Nielsen AA, Zhang J, Der BS, Gordon DB, Voigt CA. Mol Syst Biol. 2017 Nov 9;13(11):952. doi: 10.15252/msb.20167461.

28. The combinatorial control of alternative splicing in C. elegans.
Tan JH, Fraser AG. PLoS Genet. 2017 Nov 9;13(11):e1007033. doi: 10.1371/journal.pgen.1007033. eCollection 2017 Nov.

29. A Prostate Cancer Risk Element Functions as a Repressive Loop that Regulates HOXA13.
Luo Z, Rhie SK, Lay FD, Farnham PJ. Cell Rep. 2017 Nov 7;21(6):1411-1417. doi: 10.1016/j.celrep.2017.10.048.

30. f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq.
Buettner F, Pratanwanich N, McCarthy DJ, Marioni JC, Stegle O. Genome Biol. 2017 Nov 7;18(1):212. doi: 10.1186/s13059-017-1334-8.

31. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 that Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.
Yan J, Chia JC, Sheng H, Jung HI, Zavodna TO, Lu Z, Huang R, Jiao C, Craft E, Fei Z, Kochian LV, Vatamaniuk OK. Plant Cell. 2017 Nov 7. pii: tpc.00363.2017. doi: 10.1105/tpc.17.00363.

32. Gain-of-function of ASXL1 truncating protein in the pathogenesis of myeloid malignancies.
Yang H, Kurtenbach S, Guo Y, Lohse I, Durante MA, Li J, Li Z, Al-Ali H, Li L, Chen Z, Field MG, Zhang P, Chen S, Yamamoto S, Li Z, Zhou Y, Nimer SD, Harbour JW, Wahlestedt C, Xu M, Yang FC. Blood. 2017 Nov 7. pii: blood-2017-06-789669. doi: 10.1182/blood-2017-06-789669.

33. CXCR4/CXCR7/CXCL12 axis promotes an invasive phenotype in medullary thyroid carcinoma.
Werner TA, Forster CM, Dizdar L, Verde PE, Raba K, Schott M, Knoefel WT, Krieg A. Br J Cancer. 2017 Nov 7. doi: 10.1038/bjc.2017.364.

34. Transcriptome alterations of prefrontal cortical parvalbumin neurons in schizophrenia.
Enwright Iii JF, Huo Z, Arion D, Corradi JP, Tseng G, Lewis DA. Mol Psychiatry. 2017 Nov 7. doi: 10.1038/mp.2017.216.

35. Circadian clock cryptochrome proteins regulate autoimmunity.
Cao Q, Zhao X, Bai J, Gery S, Sun H, Lin DC, Chen Q, Chen Z, Mack L, Yang H, Deng R, Shi X, Chong LW, Cho H, Xie J, Li QZ, Muschen M, Atkins AR, Liddle C, Yu RT, Alkan S, Said JW, Zheng Y, Downes M, Evans RM, Koeffler HP. Proc Natl Acad Sci U S A. 2017 Nov 21;114(47):12548-12553. doi: 10.1073/pnas.1619119114. Epub 2017 Nov 6.

36. IRF3 and type I interferons fuel a fatal response to myocardial infarction.
King KR, Aguirre AD, Ye YX, Sun Y, Roh JD, Ng RP Jr, Kohler RH, Arlauckas SP, Iwamoto Y, Savol A, Sadreyev RI, Kelly M, Fitzgibbons TP, Fitzgerald KA, Mitchison T, Libby P, Nahrendorf M, Weissleder R. Nat Med. 2017 Nov 6. doi: 10.1038/nm.4428.

37. The formation of the light-sensing compartment of cone photoreceptors coincides with a transcriptional switch.
Daum JM, Keles O, Holwerda SJ, Kohler H, Rijli FM, Stadler M, Roska B. Elife. 2017 Nov 6;6. pii: e31437. doi: 10.7554/eLife.31437.

38. The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas.
Ecker JR, Geschwind DH, Kriegstein AR, Ngai J, Osten P, Polioudakis D, Regev A, Sestan N, Wickersham IR, Zeng H. Neuron. 2017 Nov 1;96(3):542-557. doi: 10.1016/j.neuron.2017.10.007. Review.

39. MicroRNAs promote skeletal muscle differentiation of mesodermal iPSC-derived progenitors.
Giacomazzi G, Holvoet B, Trenson S, Caluwe E, Kravic B, Grosemans H, Cortes-Calabuig A, Deroose CM, Huylebroeck D, Hashemolhosseini S, Janssens S, McNally E, Quattrocelli M, Sampaolesi M. Nat Commun. 2017 Nov 1;8(1):1249. doi: 10.1038/s41467-017-01359-w.

40. An Accessible Proteogenomics Informatics Resource for Cancer Researchers.
Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, Gruning B, Cooke IR, Heydarian M, Reddy KL, Griffin TJ. Cancer Res. 2017 Nov 1;77(21):e43-e46. doi: 10.1158/0008-5472.CAN-17-0331.

41. A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data.
Broom BM, Ryan MC, Brown RE, Ikeda F, Stucky M, Kane DW, Melott J, Wakefield C, Casasent TD, Akbani R, Weinstein JN. Cancer Res. 2017 Nov 1;77(21):e23-e26. doi: 10.1158/0008-5472.CAN-17-0318.

42. WebMeV: A Cloud Platform for Analyzing and Visualizing Cancer Genomic Data.
Wang YE, Kutnetsov L, Partensky A, Farid J, Quackenbush J. Cancer Res. 2017 Nov 1;77(21):e11-e14. doi: 10.1158/0008-5472.CAN-17-0802.

43. Accounting for technical noise in differential expression analysis of single-cell RNA sequencing data.
Jia C, Hu Y, Kelly D, Kim J, Li M, Zhang NR. Nucleic Acids Res. 2017 Nov 2;45(19):10978-10988. doi: 10.1093/nar/gkx754.

44. Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803.
Giner-Lamia J, Robles-Rengel R, Hernandez-Prieto MA, Muro-Pastor MI, Florencio FJ, Futschik ME. Nucleic Acids Res. 2017 Nov 16;45(20):11800-11820. doi: 10.1093/nar/gkx860.

45. Insights into interplay between rexinoid signaling and myogenic regulatory factor-associated chromatin state in myogenic differentiation.
Hamed M, Khilji S, Dixon K, Blais A, Ioshikhes I, Chen J, Li Q. Nucleic Acids Res. 2017 Nov 2;45(19):11236-11248. doi: 10.1093/nar/gkx800.

46. Network embedding-based representation learning for single cell RNA-seq data.
Li X, Chen W, Chen Y, Zhang X, Gu J, Zhang MQ. Nucleic Acids Res. 2017 Nov 2;45(19):e166. doi: 10.1093/nar/gkx750.

1. 똑똑한 사람의 뇌는 뭐가 다를까
2. '당근과 채찍' 청소년에게 안 통해... 미국 하버드대 연구팀, 뇌 연구 결과 밝혀
3. ‘뉴런’, 십자매의 완벽한 화음 비밀 발표
4. ‘뇌 하수구’로 치매 해결책 찾나
5. 머리 안 나는 '망가진 모낭'도 회복...탈모 치료 새 가능성 열려
6. 남성호르몬이 천식 발병률 낮춘다
7. 까다로운 혈관 재생 비밀 풀었다... 혈관 질환 치료 전기 마련돼
8. 임신 중 먹는 음식물, 알레르기 확률 오히려 낮춘다?
9. 게놈해독 기술 3세대로 진화… 시장 선점위해 ‘합종연횡’
10. 비만 관련 유전자 ADRB3, 미리 알았다면 날씬했을까?
11. HIV 퇴치 첫걸음... 효소 반응 쉽게 검출한다
12. 구충제로 항암 효과도 얻는다?
13. 독일 소년은 어떻게 희귀 피부병을 고쳤나
14. 담배연기, 대기오염도 혈중 카드뮴 농도 높인다
15. 몬산토, 유전자변형GM 비판에 응답하다
16. 뼈 생성 돕고 동시에 소실 막는 골다공증 치료제 물질 나왔다
17. 3D프린트로 뽑아낸 비밀의 뇌 신경세포
18. " 3,4년 뒤 100달러로 내 모든 DNA 한눈에 본다“
19. 크리스퍼 가위 교정 식품이 식탁으로 들어온다
20. 네이처, 희귀 피부병 치료 위한 줄기세포 이식 성공
21. 가족 간의 유전질환이 궁금하다면
22. 나비 무늬 결정하는 유전자 어떻게 진화했나
23. 췌장암환자 수명 조절하는 유전자 있다
24. 아토피 피부염이 스트레스 늘려
25. 박테리아와 자석 입자로 나노 변신 로봇 개발... 고성능 약물 전달체 활용 기대
26. 왼손잡이의 비밀, 아프리카 물고기가 밝힌다
- 위 기사는 동아사이언스(http://www.dongascience.com/)에서 제공하고 링크클릭시 해당 사이트로 이동하여 기사내용을 보실수 있습니다.
(주)이바이오젠
주요 제품서비스
문의: 02-3141-0791
service@e-biogen.com






(주)이바이오젠, 서울 영등포구 선유로 13길 25, 에이스하이테크시티2, 305호
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