Home > 고객지원 > Monthly Letter


문의하시기전에 게시판에서 한번 확인후 연락주시면 성심 성의껏 답변해드리겠습니다.

제목 (2017-11)RNA-Seq & Microarray 논문 및 바이오뉴스
작성자 ebiogen
작성일자 2017-11-01
조회수 91
안녕하세요? (주)이바이오젠의 RNA-Seq & Microarray 뉴스레터입니다.
(최근 유명저널에 발표된 논문정보와 바이오뉴스 제공)

가을이 깊게 물들고 있습니다. 낙엽을 사뿐히 밟으면서 가을 산책을 즐겨보면 어떨지요?^^

(주)이바이오젠 올림. (Tel. 02-3141-0791, service@e-biogen.com)
[이달의 제품/서비스 행사]

NGS(RNA-Seq/miRNA-Seq/ChIP-Seq/MBD-Seq) 서비스 할인행사!
Antibody Array 실험분석서비스 ~20% 할인행사[~12/31]

1. Dynamic changes in eIF4F-mRNA interactions revealed by global analyses of environmental stress responses.
Costello JL, Kershaw CJ, Castelli LM, Talavera D, Rowe W, Sims PFG, Ashe MP, Grant CM, Hubbard SJ, Pavitt GD. Genome Biol. 2017 Oct 27;18(1):201. doi: 10.1186/s13059-017-1338-4.

2. Development of functional ectopic compound eyes in scarabaeid beetles by knockdown of orthodenticle.
Zattara EE, Macagno ALM, Busey HA, Moczek AP. Proc Natl Acad Sci U S A. 2017 Oct 24. pii: 201714895. doi: 10.1073/pnas.1714895114.

3. Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism.
Ryu JY, Kim HU, Lee SY. Proc Natl Acad Sci U S A. 2017 Oct 24. pii: 201713050. doi: 10.1073/pnas.1713050114.

4. Adipose tissue macrophages induce hepatic neutrophil recruitment and macrophage accumulation in mice.
Bijnen M, Josefs T, Cuijpers I, Maalsen CJ, van de Gaar J, Vroomen M, Wijnands E, Rensen SS, Greve JWM, Hofker MH, Biessen EAL, Stehouwer CDA, Schalkwijk CG, Wouters K. Gut. 2017 Oct 26. pii: gutjnl-2016-313654. doi: 10.1136/gutjnl-2016-313654.

5. Cardiovascular homeostasis dependence on MICU2, a regulatory subunit of the mitochondrial calcium uniporter.
Bick AG, Wakimoto H, Kamer KJ, Sancak Y, Goldberger O, Axelsson A, DeLaughter DM, Gorham JM, Mootha VK, Seidman JG, Seidman CE. Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):E9096-E9104. doi: 10.1073/pnas.1711303114. Epub 2017 Oct 9.

6. Broad role for YBX1 in defining the small noncoding RNA composition of exosomes.
Shurtleff MJ, Yao J, Qin Y, Nottingham RM, Temoche-Diaz MM, Schekman R, Lambowitz AM. Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):E8987-E8995. doi: 10.1073/pnas.1712108114. Epub 2017 Oct 10.

7. Efficient protein production by yeast requires global tuning of metabolism.
Huang M, Bao J, Hallstrom BM, Petranovic D, Nielsen J. Nat Commun. 2017 Oct 25;8(1):1131. doi: 10.1038/s41467-017-00999-2.

8. sRNAnalyzer-a flexible and customizable small RNA sequencing data analysis pipeline.
Wu X, Kim TK, Baxter D, Scherler K, Gordon A, Fong O, Etheridge A, Galas DJ, Wang K. Nucleic Acids Res. 2017 Oct 24. doi: 10.1093/nar/gkx999.

9. FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data.
Leader DP, Krause SA, Pandit A, Davies SA, Dow JAT. Nucleic Acids Res. 2017 Oct 24. doi: 10.1093/nar/gkx976.

10. OverGeneDB: a database of 5' end protein coding overlapping genes in human and mouse genomes.
Rosikiewicz W, Suzuki Y, Makalowska I. Nucleic Acids Res. 2017 Oct 23. doi: 10.1093/nar/gkx948.

11. PolyA_DB 3 catalogs cleavage and polyadenylation sites identified by deep sequencing in multiple genomes.
Wang R, Nambiar R, Zheng D, Tian B. Nucleic Acids Res. 2017 Oct 23. doi: 10.1093/nar/gkx1000.

12. miR-6883 family miRNAs target CDK4/6 to induce G1 phase cell cycle arrest in colon cancer cells.
Lulla AR, Slifker MJ, Zhou Y, Lev A, Einarson MB, Dicker DT, El-Deiry WS. Cancer Res. 2017 Oct 23. pii: canres.1767.2017. doi: 10.1158/0008-5472.CAN-17-1767.

13. dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease.
Zheng LL, Zhou KR, Liu S, Zhang DY, Wang ZL, Chen ZR, Yang JH, Qu LH. Nucleic Acids Res. 2017 Oct 20. doi: 10.1093/nar/gkx972.

14. Xenbase: a genomic, epigenomic and transcriptomic model organism database.
Karimi K, Fortriede JD, Lotay VS, Burns KA, Wang DZ, Fisher ME, Pells TJ, James-Zorn C, Wang Y, Ponferrada VG, Chu S, Chaturvedi P, Zorn AM, Vize PD. Nucleic Acids Res. 2017 Oct 20. doi: 10.1093/nar/gkx936.

15. Profiling RNA-Seq at multiple resolutions markedly increases the number of causal eQTLs in autoimmune disease.
Odhams CA, Cunninghame Graham DS, Vyse TJ. PLoS Genet. 2017 Oct 23;13(10):e1007071. doi: 10.1371/journal.pgen.1007071.

16. Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissues.
Brown AA, Vinuela A, Delaneau O, Spector TD, Small KS, Dermitzakis ET. Nat Genet. 2017 Oct 23. doi: 10.1038/ng.3979.

17. Long-acting MIC-1/GDF15 molecules to treat obesity: Evidence from mice to monkeys.
Xiong Y, Walker K, Min X, Hale C, Tran T, Komorowski R, Yang J, Davda J, Nuanmanee N, Kemp D, Wang X, Liu H, Miller S, Lee KJ, Wang Z, Veniant MM. Sci Transl Med. 2017 Oct 18;9(412). pii: eaan8732. doi: 10.1126/scitranslmed.aan8732.

18. A Role for Dystonia-Associated Genes in Spinal GABAergic Interneuron Circuitry.
Zhang J, Weinrich JAP, Russ JB, Comer JD, Bommareddy PK, DiCasoli RJ, Wright CVE, Li Y, van Roessel PJ, Kaltschmidt JA. Cell Rep. 2017 Oct 17;21(3):666-678. doi: 10.1016/j.celrep.2017.09.079.

19. Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS.
Lin HY, Liu Q, Li X, Yang J, Liu S, Huang Y, Scanlon MJ, Nettleton D, Schnable PS. Genome Biol. 2017 Oct 17;18(1):192. doi: 10.1186/s13059-017-1328-6.

20. Low-Dose Exposure to Ionizing Radiation Deregulates the Brain-Specific miR-134 in Interventional Cardiologists.
Borghini A, Vecoli C, Mercuri A, Carpeggiani C, Piccaluga E, Guagliumi G, Picano E, Andreassi MG. Circulation. 2017 Oct 16. pii: CIRCULATIONAHA.117.031251. doi: 10.1161/CIRCULATIONAHA.117.031251.

21. Effect of MAF amplification on treatment outcomes with adjuvant zoledronic acid in early breast cancer: a secondary analysis of the international, open-label, randomised, controlled, phase 3 AZURE (BIG 01/04) trial.
Coleman R, Hall A, Albanell J, Hanby A, Bell R, Cameron D, Dodwell D, Marshall H, Jean-Mairet J, Tercero JC, Rojo F, Gregory W, Gomis RR. Lancet Oncol. 2017 Oct 13. pii: S1470-2045(17)30603-4. doi: 10.1016/S1470-2045(17)30603-4.

22. Database Resources of the BIG Data Center in 2018.
BIG Data Center Members. Nucleic Acids Res. 2017 Oct 3. doi: 10.1093/nar/gkx897.

23. Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803.
Giner-Lamia J, Robles-Rengel R, Hernandez-Prieto MA, Muro-Pastor MI, Florencio FJ, Futschik ME. Nucleic Acids Res. 2017 Oct 3. doi: 10.1093/nar/gkx860.

24. Inference of RNA decay rate from transcriptional profiling highlights the regulatory programs of Alzheimer's disease.
Alkallas R, Fish L, Goodarzi H, Najafabadi HS. Nat Commun. 2017 Oct 13;8(1):909. doi: 10.1038/s41467-017-00867-z.

25. Single-cell RNA-seq reveals a distinct transcriptome signature of aneuploid hematopoietic cells.
Zhao X, Gao S, Wu Z, Kajigaya S, Feng X, Liu Q, Townsley DM, Cooper J, Chen J, Keyvanfar K, Fernandez Ibanez MDP, Wang X, Young NS. Blood. 2017 Oct 13. pii: blood-2017-08-803353. doi: 10.1182/blood-2017-08-803353.

26. Ovarian Follicular Theca Cell Recruitment, Differentiation and Impact on Fertility: 2017 Update.
Richards JS, Ren YA, Candelaria N, Adams JE, Rajkovic A. Endocr Rev. 2017 Oct 5. doi: 10.1210/er.2017-00164.

27. Extracellular matrix stiffness and cell contractility control RNA localization to promote cell migration.
Wang T, Hamilla S, Cam M, Aranda-Espinoza H, Mili S. Nat Commun. 2017 Oct 12;8(1):896. doi: 10.1038/s41467-017-00884-y.

28. Ailanthone inhibits non-small cell lung cancer cell growth through repressing DNA replication via downregulating RPA1.
Ni Z, Yao C, Zhu X, Gong C, Xu Z, Wang L, Li S, Zou C, Zhu S. Br J Cancer. 2017 Oct 12. doi: 10.1038/bjc.2017.319.

29. Expression and role of TYRO3 and AXL as potential therapeutical targets in leiomyosarcoma.
Dantas-Barbosa C, Lesluyes T, Loarer FL, Chibon F, Treilleux I, Coindre JM, Meeus P, Brahmi M, Bally O, Ray-Coquard I, Sunyach MP, Cesne AL, Mir O, Bonvalot S, Toulmonde M, Italiano A, Saintigny P, Jean-Denis M, Ducimetiere F, Ranchere D, El Sayadi H, Alberti L, Blay JY. Br J Cancer. 2017 Oct 12. doi: 10.1038/bjc.2017.354.

30. Role of the Astroglial Glutamate Exchanger xCT in Ventral Hippocampus in Resilience to Stress.
Nasca C, Bigio B, Zelli D, de Angelis P, Lau T, Okamoto M, Soya H, Ni J, Brichta L, Greengard P, Neve RL, Lee FS, McEwen BS. Neuron. 2017 Oct 11;96(2):402-413.e5. doi: 10.1016/j.neuron.2017.09.020.

31. Detecting Activated Cell Populations Using Single-Cell RNA-Seq.
Wu YE, Pan L, Zuo Y, Li X, Hong W. Neuron. 2017 Oct 11;96(2):313-329.e6. doi: 10.1016/j.neuron.2017.09.026.

32. Epithelial-Cell-Derived Phospholipase A2 Group 1B Is an Endogenous Anthelmintic.
Entwistle LJ, Pelly VS, Coomes SM, Kannan Y, Perez-Lloret J, Czieso S, Silva Dos Santos M, MacRae JI, Collinson L, Sesay A, Nikolov N, Metidji A, Helmby H, Hui DY, Wilson MS. Cell Host Microbe. 2017 Oct 11;22(4):484-493.e5. doi: 10.1016/j.chom.2017.09.006.

33. Combinatorial Microenvironments Impose a Continuum of Cellular Responses to a Single Pathway-Targeted Anti-cancer Compound.
Lin CH, Jokela T, Gray J, LaBarge MA. Cell Rep. 2017 Oct 10;21(2):533-545. doi: 10.1016/j.celrep.2017.09.058.

34. A Specific ChREBP and PPARα Cross-Talk Is Required for the Glucose-Mediated FGF21 Response.
Iroz A, Montagner A, Benhamed F, Levavasseur F, Polizzi A, Anthony E, Regnier M, Fouche E, Lukowicz C, Cauzac M, Tournier E, Do-Cruzeiro M, Daujat-Chavanieu M, Gerbal-Chalouin S, Fauveau V, Marmier S, Burnol AF, Guilmeau S, Lippi Y, Girard J, Wahli W, Dentin R, Guillou H, Postic C. Cell Rep. 2017 Oct 10;21(2):403-416. doi: 10.1016/j.celrep.2017.09.065.

35. Antigen receptor repertoire profiling from RNA-seq data.
Bolotin DA, Poslavsky S, Davydov AN, Frenkel FE, Fanchi L, Zolotareva OI, Hemmers S, Putintseva EV, Obraztsova AS, Shugay M, Ataullakhanov RI, Rudensky AY, Schumacher TN, Chudakov DM. Nat Biotechnol. 2017 Oct 11;35(10):908-911. doi: 10.1038/nbt.3979.

36. CHD7 deficiency delays leukemogenesis in mice induced by CBFB-MYH11.
Zhen T, Kwon E, Zhao L, Hsu J, Hyde RK, Lu Y, Alemu L, Speck NA, Liu PP. Blood. 2017 Oct 10. pii: blood-2017-04-780106. doi: 10.1182/blood-2017-04-780106.

37. The nuclear receptor ERβ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading.
Tarallo R, Giurato G, Bruno G, Ravo M, Rizzo F, Salvati A, Ricciardi L, Marchese G, Cordella A, Rocco T, Gigantino V, Pierri B, Cimmino G, Milanesi L, Ambrosino C, Nyman TA, Nassa G, Weisz A. Genome Biol. 2017 Oct 6;18(1):189. doi: 10.1186/s13059-017-1321-0.

38. Molecular architecture underlying fluid absorption by the developing inner ear.
Honda K, Kim SH, Kelly MC, Burns JC, Constance L, Li X, Zhou F, Hoa M, Kelley MW, Wangemann P, Morell RJ, Griffith AJ. Elife. 2017 Oct 10;6. pii: e26851. doi: 10.7554/eLife.26851.

39. A sexually dimorphic pre-stressed translational signature in CA3 pyramidal neurons of BDNF Val66Met mice.
Marrocco J, Petty GH, Rios MB, Gray JD, Kogan JF, Waters EM, Schmidt EF, Lee FS, McEwen BS. Nat Commun. 2017 Oct 9;8(1):808. doi: 10.1038/s41467-017-01014-4.

40. SCENIC: single-cell regulatory network inference and clustering.
Aibar S, Gonzalez-Blas CB, Moerman T, Huynh-Thu VA, Imrichova H, Hulselmans G, Rambow F, Marine JC, Geurts P, Aerts J, van den Oord J, Atak ZK, Wouters J, Aerts S. Nat Methods. 2017 Oct 9. doi: 10.1038/nmeth.4463.

41. Mouse embryonic stem cells can differentiate via multiple paths to the same state.
Briggs JA, Li VC, Lee S, Woolf CJ, Klein A, Kirschner MW. Elife. 2017 Oct 9;6. pii: e26945. doi: 10.7554/eLife.26945.

42. Altered hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways.
Bhattacharyya S, Pradhan K, Campbell N, Mazdo J, Vasantkumar A, Maqbool S, Bhagat TD, Gupta S, Suzuki M, Yu Y, Greally JM, Steidl U, Bradner J, Dawlaty M, Godley L, Maitra A, Verma A. Genome Res. 2017 Oct 6. doi: 10.1101/gr.222794.117.

43. Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development.
Guo J, Grow EJ, Yi C, Mlcochova H, Maher GJ, Lindskog C, Murphy PJ, Wike CL, Carrell DT, Goriely A, Hotaling JM, Cairns BR. Cell Stem Cell. 2017 Oct 5;21(4):533-546.e6. doi: 10.1016/j.stem.2017.09.003.

44. Host MicroRNAs-221 and -222 Inhibit HIV-1 Entry in Macrophages by Targeting the CD4 Viral Receptor.
Lodge R, Ferreira Barbosa JA, Lombard-Vadnais F, Gilmore JC, Deshiere A, Gosselin A, Wiche Salinas TR, Bego MG, Power C, Routy JP, Ancuta P, Tremblay MJ, Cohen EA. Cell Rep. 2017 Oct 3;21(1):141-153. doi: 10.1016/j.celrep.2017.09.030.

45. Gene-regulatory interactions in embryonic stem cells represent cell-type specific gene regulatory programs.
Ha M, Hong S. Nucleic Acids Res. 2017 Oct 13;45(18):10428-10435. doi: 10.1093/nar/gkx752.

46. Systems-level identification of PKA-dependent signaling in epithelial cells.
Isobe K, Jung HJ, Yang CR, Claxton J, Sandoval P, Burg MB, Raghuram V, Knepper MA. Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):E8875-E8884. doi: 10.1073/pnas.1709123114. Epub 2017 Oct 2.

47. Long-term expansion of alveolar stem cells derived from human iPS cells in organoids.
Yamamoto Y, Gotoh S, Korogi Y, Seki M, Konishi S, Ikeo S, Sone N, Nagasaki T, Matsumoto H, Muro S, Ito I, Hirai T, Kohno T, Suzuki Y, Mishima M. Nat Methods. 2017 Oct 2. doi: 10.1038/nmeth.4448.

48. Isoform Evolution in Primates through Independent Combination of Alternative RNA Processing Events.
Zhang SJ, Wang C, Yan S, Fu A, Luan X, Li Y, Sunny Shen Q, Zhong X, Chen JY, Wang X, Chin-Ming Tan B, He A, Li CY. Mol Biol Evol. 2017 Oct 1;34(10):2453-2468. doi: 10.1093/molbev/msx212.

1. 알츠하이머 치료제, ‘트로이 목마’로 살렸다
2. 세포 속 '인지질' 전달 메커니즘 밝혀졌다
3. '제2형 당뇨병' 치료 한 발 더 다가섰다
4. 비만.제2형 당뇨병, 인슐린 저항원인 규명
5. 녹내장, 나노기술 유도 열충격 단백질로 치료가능
6. 자폐 원인유전자 'DYRK1A' 규명..기능저해시 사회성↓
7. 감초 추출물로 파킨슨병 예방 치료 길 열어'
8. 손상된 DNA 복구 조절하는 단백질 규명
9. 쌀 껍질 속 성분…유방암 증식 억제
10. “파킨슨병 한방치료 병행 효과 입증”
11. 미세 플라스틱, 담수 생태계도 위협…물벼룩 생식 발달 저해
12. “하루 우유 2컵 마시면 여성 복부비만 위험 21% 감소”
13. "손상된 심장 재생 돕는 기능 회복 치료 약물 개발”
14. 웨어러블 의료기 사용 가능 휘어지는 전자소자 개발
15. 제주도 바닷가 신종미생물에서 항생제 물질 발견
16. 스마트폰 중독, 뇌 인지 조절능력 악영향
17. 상처엔 꿰매지 말고 ‘엘라스틴’ 하세요
18. 빨리 배부르고 싶다면 OOOO 먹어라!
19. 두리안 ‘똥 냄새’의 비밀 풀렸다
20. 아프리카인 피부색 결정 유전자 확인
21. 화장품에 거미줄이 들어간다고?
22. DNA 자를 필요없는 4세대 염기교정기 개발
23. 초고지방식 먹은 쥐가 장수한다
24. [카드뉴스] 엄마가 느낀 공포, 냄새로 유전된다
25. 하품 전염되는 이유, 뇌에서 발견
26. 남자 청소년 열에 아홉은 근시?
27. 영화 ‘유리정원’ 처럼 사람에게 엽록체 이식할 수 있을까
28. 다운증후군 유전자가 자폐증도 일으킨다
- 위 기사는 동아사이언스(http://www.dongascience.com/)에서 제공하고 링크클릭시 해당 사이트로 이동하여 기사내용을 보실수 있습니다.
(주)이바이오젠
주요 제품서비스
문의: 02-3141-0791
service@e-biogen.com






(주)이바이오젠, 서울 영등포구 선유로 13길 25, 에이스하이테크시티2, 305호
Tel. 02-3141-0791, Fax. 02-3141-0792, service@e-biogen.com
다운로드수 0