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제목 (2017-10)RNA-Seq & Microarray 논문 및 바이오뉴스
작성자 ebiogen
작성일자 2017-10-01
조회수 244
안녕하세요? (주)이바이오젠의 RNA-Seq & Microarray 뉴스레터입니다.
(최근 유명저널에 발표된 논문정보와 바이오뉴스 제공)

수확의 계절입니다. 풍성하고 행복한 추석 명절 보내시길 바라고 감기 조심하세요.^^

(주)이바이오젠 올림. (Tel. 02-3141-0791, service@e-biogen.com)
[이달의 제품/서비스 행사]

NGS(RNA-Seq/miRNA-Seq/ChIP-Seq/MBD-Seq) 서비스 할인행사!
세포/조직 이미지 분석 소프트웨어(SABIA) 업그레이드!(연 60만원)

1. Super-enhancers promote transcriptional dysregulation in nasopharyngeal carcinoma.
Yuan J, Jiang YY, Mayakonda A, Huang M, Ding LW, Lin H, Yu F, Lu Y, Loh TKS, Chow M, Savage SL, Tyner JW, Lin DC, Koeffler HP. Cancer Res. 2017 Sep 26. pii: canres.1143.2017. doi: 10.1158/0008-5472.CAN-17-1143.

2. Hippo Reprograms the Transcriptional Response to Ras Signaling.
Pascual J, Jacobs J, Sansores-Garcia L, Natarajan M, Zeitlinger J, Aerts S, Halder G, Hamaratoglu F. Dev Cell. 2017 Sep 25;42(6):667-680.e4. doi: 10.1016/j.devcel.2017.08.013.

3. The Arabidopsis MOS4-associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing.
Jia T, Zhang B, You C, Zhang Y, Zeng L, Li S, Johnson KCM, Yu B, Li X, Chen X. Plant Cell. 2017 Sep 25. pii: tpc.00370.2017. doi: 10.1105/tpc.17.00370.

4. Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks.
Kelley DZ, Flam E, Izumchenko E, Danilova L, Wulf HA, Guo T, Singman DA, Afsari B, Skaist A, Considine M, Stavrovskaya E, Bishop JA, Westra WH, Khan Z, Koch WM, Sidranski D, Wheelan SJ, Califano J, Favorov AV, Fertig EJ, Gaykalova DA. Cancer Res. 2017 Sep 25. pii: canres.0833.2017. doi: 10.1158/0008-5472.CAN-17-0833.

5. Regulation of HuR structure and function by dihydrotanshinone-I.
Lal P, Cerofolini L, D'Agostino VG, Zucal C, Fuccio C, Bonomo I, Dassi E, Giuntini S, Di Maio D, Vishwakarma V, Preet R, Williams SN, Fairlamb MS, Munk R, Lehrmann E, Abdelmohsen K, Elezgarai SR, Luchinat C, Novellino E, Quattrone A, Biasini E, Manzoni L, Gorospe M, Dixon DA, Seneci P, Marinelli L, Fragai M, Provenzani A. Nucleic Acids Res. 2017 Sep 19;45(16):9514-9527. doi: 10.1093/nar/gkx623.

6. Targeted reconstruction of T cell receptor sequence from single cell RNA-seq links CDR3 length to T cell differentiation state.
Afik S, Yates KB, Bi K, Darko S, Godec J, Gerdemann U, Swadling L, Douek DC, Klenerman P, Barnes EJ, Sharpe AH, Haining WN, Yosef N. Nucleic Acids Res. 2017 Sep 19;45(16):e148. doi: 10.1093/nar/gkx615.

7. Single-cell analyses to tailor treatments.
Shalek AK, Benson M. Sci Transl Med. 2017 Sep 20;9(408). pii: eaan4730. doi: 10.1126/scitranslmed.aan4730. Review.

8. Human Tissue-Resident Memory T Cells Are Defined by Core Transcriptional and Functional Signatures in Lymphoid and Mucosal Sites.
Kumar BV, Ma W, Miron M, Granot T, Guyer RS, Carpenter DJ, Senda T, Sun X, Ho SH, Lerner H, Friedman AL, Shen Y, Farber DL. Cell Rep. 2017 Sep 19;20(12):2921-2934. doi: 10.1016/j.celrep.2017.08.078.

9. Systematic Kinase Inhibitor Profiling Identifies CDK9 as a Synthetic Lethal Target in NUT Midline Carcinoma.
Bragelmann J, Dammert MA, Dietlein F, Heuckmann JM, Choidas A, Bohm S, Richters A, Basu D, Tischler V, Lorenz C, Habenberger P, Fang Z, Ortiz-Cuaran S, Leenders F, Eickhoff J, Koch U, Getlik M, Termathe M, Sallouh M, Greff Z, Varga Z, Balke-Want H, French CA, Peifer M, Reinhardt HC, Orfi L, Keri G, Ansen S, Heukamp LC, Buttner R, Rauh D, Klebl BM, Thomas RK, Sos ML. Cell Rep. 2017 Sep 19;20(12):2833-2845. doi: 10.1016/j.celrep.2017.08.082.

10. Comparative analysis reveals genomic features of stress-induced transcriptional readthrough.
Vilborg A, Sabath N, Wiesel Y, Nathans J, Levy-Adam F, Yario TA, Steitz JA, Shalgi R. Proc Natl Acad Sci U S A. 2017 Sep 19. pii: 201711120. doi: 10.1073/pnas.1711120114.

11. Whole-genome and Transcriptome Sequencing of Prostate Cancer Identify New Genetic Alterations Driving Disease Progression.
Ren S, Wei GH, Liu D, Wang L, Hou Y, Zhu S, Peng L, Zhang Q, Cheng Y, Su H, Zhou X, Zhang J, Li F, Zheng H, Zhao Z, Yin C, He Z, Gao X, Zhau HE, Chu CY, Wu JB, Collins C, Volik SV, Bell R, Huang J, Wu K, Xu D, Ye D, Yu Y, Zhu L, Qiao M, Lee HM, Yang Y, Zhu Y, Shi X, Chen R, Wang Y, Xu W, Cheng Y, Xu C, Gao X, Zhou T, Yang B, Hou J, Liu L, Zhang Z, Zhu Y, Qin C, Shao P, Pang J, Chung LWK, Xu J, Wu CL, Zhong W, Xu X, Li Y, Zhang X, Wang J, Yang H, Wang J, Huang H, Sun Y. Eur Urol. 2017 Sep 15. pii: S0302-2838(17)30720-0. doi: 10.1016/j.eururo.2017.08.027.

12. DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A.
Huang YH, Su J, Lei Y, Brunetti L, Gundry MC, Zhang X, Jeong M, Li W, Goodell MA. Genome Biol. 2017 Sep 18;18(1):176. doi: 10.1186/s13059-017-1306-z.

13. A high resolution atlas of gene expression in the domestic sheep (Ovis aries).
Clark EL, Bush SJ, McCulloch MEB, Farquhar IL, Young R, Lefevre L, Pridans C, Tsang H, Wu C, Afrasiabi C, Watson M, Whitelaw CB, Freeman TC, Summers KM, Archibald AL, Hume DA. PLoS Genet. 2017 Sep 15;13(9):e1006997. doi: 10.1371/journal.pgen.1006997.

14. Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination.
Narsai R, Gouil Q, Secco D, Srivastava A, Karpievitch YV, Liew LC, Lister R, Lewsey MG, Whelan J. Genome Biol. 2017 Sep 15;18(1):172. doi: 10.1186/s13059-017-1302-3.

15. Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs.
Fehlmann T, Backes C, Kahraman M, Haas J, Ludwig N, Posch AE, Wurstle ML, Hubenthal M, Franke A, Meder B, Meese E, Keller A. Nucleic Acids Res. 2017 Sep 6;45(15):8731-8744. doi: 10.1093/nar/gkx595.

16. Prediction of genome-wide DNA methylation in repetitive elements.
Zheng Y, Joyce BT, Liu L, Zhang Z, Kibbe WA, Zhang W, Hou L. Nucleic Acids Res. 2017 Sep 6;45(15):8697-8711. doi: 10.1093/nar/gkx587.

17. Information transduction capacity reduces the uncertainties in annotation-free isoform discovery and quantification.
Deng Y, Bao F, Yang Y, Ji X, Du M, Zhang Z, Wang M, Dai Q. Nucleic Acids Res. 2017 Sep 6;45(15):e143. doi: 10.1093/nar/gkx585.

18. Splatter: simulation of single-cell RNA sequencing data.
Zappia L, Phipson B, Oshlack A. Genome Biol. 2017 Sep 12;18(1):174. doi: 10.1186/s13059-017-1305-0.

19. Prosapip1-Dependent Synaptic Adaptations in the Nucleus Accumbens Drive Alcohol Intake, Seeking, and Reward.
Laguesse S, Morisot N, Shin JH, Liu F, Adrover MF, Sakhai SA, Lopez MF, Phamluong K, Griffin WC 3rd, Becker HC, Bender KJ, Alvarez VA, Ron D. Neuron. 2017 Sep 7. pii: S0896-6273(17)30780-8. doi: 10.1016/j.neuron.2017.08.037.

20. Discovery of human-similar gene fusions in canine cancers.
Ulve R, Rault M, Bahin M, Lagoutte L, Abadie J, De Brito C, Coindre JM, Botherel N, Rousseau A, Wucher V, Cadieu E, Thieblemont C, Hitte C, Cornevin L, Cabillic F, Bachelot L, Gilot D, Hennuy B, Guillaudeux T, Le Goff A, Derrien T, Hedan B, Andre C. Cancer Res. 2017 Sep 7. pii: canres.2691.2016. doi: 10.1158/0008-5472.CAN-16-2691.

21. Aldehyde dehydrogenase 1B1: a novel immunohistological marker for colorectal cancer.
Matsumoto A, Arcaroli J, Chen Y, Gasparetto M, Neumeister V, Thompson DC, Singh S, Smith C, Messersmith W, Vasiliou V. Br J Cancer. 2017 Sep 7. doi: 10.1038/bjc.2017.304.

22. Toward the human cellular microRNAome.
McCall MN, Kim MS, Adil M, Patil AH, Lu Y, Mitchell CJ, Leal-Rojas P, Xu J, Kumar M, Dawson VL, Dawson TM, Baras AS, Rosenberg AZ, Arking DE, Burns KH, Pandey A, Halushka MK. Genome Res. 2017 Sep 6. doi: 10.1101/gr.222067.117.

23. Cellular responses to human cytomegalovirus infection: Induction of a mesenchymal-to-epithelial transition (MET) phenotype.
Oberstein A, Shenk T. Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):E8244-E8253. doi: 10.1073/pnas.1710799114. Epub 2017 Sep 5.

24. miR-146a modulates autoreactive Th17 cell differentiation and regulates organ-specific autoimmunity.
Li B, Wang X, Choi IY, Wang YC, Liu S, Pham AT, Moon H, Smith DJ, Rao DS, Boldin MP, Yang L. J Clin Invest. 2017 Sep 5. pii: 94012. doi: 10.1172/JCI94012.

25. Thyroid hormone receptor beta and NCOA4 regulate terminal erythrocyte differentiation.
Gao X, Lee HY, Li W, Platt RJ, Barrasa MI, Ma Q, Elmes RR, Rosenfeld MG, Lodish HF. Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):10107-10112. doi: 10.1073/pnas.1711058114. Epub 2017 Sep 1.

26. The biogenesis pathway of tRNA-derived piRNAs in Bombyx germ cells.
Honda S, Kawamura T, Loher P, Morichika K, Rigoutsos I, Kirino Y. Nucleic Acids Res. 2017 Sep 6;45(15):9108-9120. doi: 10.1093/nar/gkx537.

27. Sexual Dimorphism and Retinal Mosaic Diversification following the Evolution of a Violet Receptor in Butterflies.
McCulloch KJ, Yuan F, Zhen Y, Aardema ML, Smith G, Llorente-Bousquets J, Andolfatto P, Briscoe AD. Mol Biol Evol. 2017 Sep 1;34(9):2271-2284. doi: 10.1093/molbev/msx163.

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2. 세포는 분열하면서 어떻게 건강한 세포를 골라낼까
3. 난임 문제 해결할까...배아 생명 유지에 필수적인 유전자 확인
4. 돼지→인간 장기이식, 가능성 높아졌다
5. 에이즈 거의 완벽하게 예방하는 백신 후보물질 개발
6. 모세혈관, 장기에 따라 형태-기능 달라진다
7. 유전자 가위로 바이러스 제거 '돼지 장기, 인간이식 길 열려'
8. 녹내장 발병원인 규명… 새 치료법 찾아
9. 김치, 된장 속에서 당뇨합병증 예방 물질 발견
10. 옛 양피지 문서 훼손하는 미생물 밝혔다.
11. 찬 바람만 불면 훌쩍, 만성 알레르기성 질환 원인 찾았다
12. 일란성 쌍둥이, 어디가 다를까?
13. 400년전 미라, 유전자 검사해 보니 “동맥경화가 사망원인”
14. 세포벽으로 ‘생체 종이’ 만들어
15. 수 천만 개의 원자가 하나처럼 움직이는 때는?
16. 질병 일으키는 ‘수명 다한 세포’ 제거 시스템 찾았다
17. 한국전쟁 실종자 신원 확인, 새로운 DNA 분석 기술로 찾는다
18. 팔과 다리를 가진 스스로 걸어 다니는 ‘DNA 나노로봇’
19. “DNA 분석 기술 발달로 직계가족 아니라도 실종자 확인 가능해”
20. 계속 세포분열이 일어나는데 장기는 어떻게 일정한 크기를 유지할까
21. 식물의 ‘잎 크기’ 결정하는 요인은?
- 위 기사는 동아사이언스(http://www.dongascience.com/)에서 제공하고 링크클릭시 해당 사이트로 이동하여 기사내용을 보실수 있습니다.
(주)이바이오젠
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